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Class: CryoEMQualityMetrics

Cryo-EM specific quality assessments recorded during or after data collection

URI: lambda:CryoEMQualityMetrics

classDiagram class CryoEMQualityMetrics click CryoEMQualityMetrics href "../CryoEMQualityMetrics/" AttributeGroup <|-- CryoEMQualityMetrics click AttributeGroup href "../AttributeGroup/" CryoEMQualityMetrics : description CryoEMQualityMetrics : ice_contamination CryoEMQualityMetrics --> "0..1" IceContaminationEnum : ice_contamination click IceContaminationEnum href "../IceContaminationEnum/" CryoEMQualityMetrics : ice_quality CryoEMQualityMetrics --> "0..1" IceQualityEnum : ice_quality click IceQualityEnum href "../IceQualityEnum/" CryoEMQualityMetrics : particle_concentration CryoEMQualityMetrics --> "0..1" ParticleConcentrationEnum : particle_concentration click ParticleConcentrationEnum href "../ParticleConcentrationEnum/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
ice_contamination 0..1
IceContaminationEnum		 Assessment of ice contamination level on the cryo-EM grid direct
ice_quality 0..1
IceQualityEnum		 Assessment of vitreous ice thickness/quality for data collection direct
particle_concentration 0..1
ParticleConcentrationEnum		 Assessment of particle concentration on the cryo-EM grid direct
description 0..1
String		 AttributeGroup

Usages

used by used in type used
QualityMetrics grid_quality range CryoEMQualityMetrics

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/lambda/

Mappings

Mapping Type Mapped Value
self lambda:CryoEMQualityMetrics
native lambda:CryoEMQualityMetrics

LinkML Source

Direct

name: CryoEMQualityMetrics
description: Cryo-EM specific quality assessments recorded during or after data collection
from_schema: http://w3id.org/lambda/
is_a: AttributeGroup
attributes:
  ice_contamination:
    name: ice_contamination
    description: Assessment of ice contamination level on the cryo-EM grid
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - CryoEMQualityMetrics
    range: IceContaminationEnum
  ice_quality:
    name: ice_quality
    description: Assessment of vitreous ice thickness/quality for data collection
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - CryoEMQualityMetrics
    range: IceQualityEnum
  particle_concentration:
    name: particle_concentration
    description: Assessment of particle concentration on the cryo-EM grid
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - CryoEMQualityMetrics
    range: ParticleConcentrationEnum

Induced

name: CryoEMQualityMetrics
description: Cryo-EM specific quality assessments recorded during or after data collection
from_schema: http://w3id.org/lambda/
is_a: AttributeGroup
attributes:
  ice_contamination:
    name: ice_contamination
    description: Assessment of ice contamination level on the cryo-EM grid
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: ice_contamination
    owner: CryoEMQualityMetrics
    domain_of:
    - CryoEMQualityMetrics
    range: IceContaminationEnum
  ice_quality:
    name: ice_quality
    description: Assessment of vitreous ice thickness/quality for data collection
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: ice_quality
    owner: CryoEMQualityMetrics
    domain_of:
    - CryoEMQualityMetrics
    range: IceQualityEnum
  particle_concentration:
    name: particle_concentration
    description: Assessment of particle concentration on the cryo-EM grid
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: particle_concentration
    owner: CryoEMQualityMetrics
    domain_of:
    - CryoEMQualityMetrics
    range: ParticleConcentrationEnum
  description:
    name: description
    from_schema: http://w3id.org/lambda/
    alias: description
    owner: CryoEMQualityMetrics
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string