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Class: Dataset

Root container holding flat entity collections and association tables. Follows relational database design patterns for structural biology data.

URI: lambda:Dataset

classDiagram class Dataset click Dataset href "../Dataset/" NamedThing <|-- Dataset click NamedThing href "../NamedThing/" Dataset : data_files Dataset --> "*" DataFile : data_files click DataFile href "../DataFile/" Dataset : description Dataset : experiment_instrument_associations Dataset --> "*" ExperimentInstrumentAssociation : experiment_instrument_associations click ExperimentInstrumentAssociation href "../ExperimentInstrumentAssociation/" Dataset : experiment_person_associations Dataset --> "*" ExperimentPersonAssociation : experiment_person_associations click ExperimentPersonAssociation href "../ExperimentPersonAssociation/" Dataset : experiment_runs Dataset --> "*" ExperimentRun : experiment_runs click ExperimentRun href "../ExperimentRun/" Dataset : experiment_sample_associations Dataset --> "*" ExperimentSampleAssociation : experiment_sample_associations click ExperimentSampleAssociation href "../ExperimentSampleAssociation/" Dataset : id Dataset : images Dataset --> "*" Image : images click Image href "../Image/" Dataset : instruments Dataset --> "*" Instrument : instruments click Instrument href "../Instrument/" Dataset : keywords Dataset : nucleic_acids Dataset --> "*" NucleicAcid : nucleic_acids click NucleicAcid href "../NucleicAcid/" Dataset : organizations Dataset --> "*" Organization : organizations click Organization href "../Organization/" Dataset : person_organization_associations Dataset --> "*" PersonOrganizationAssociation : person_organization_associations click PersonOrganizationAssociation href "../PersonOrganizationAssociation/" Dataset : persons Dataset --> "*" Person : persons click Person href "../Person/" Dataset : protein_constructs Dataset --> "*" ProteinConstruct : protein_constructs click ProteinConstruct href "../ProteinConstruct/" Dataset : proteins Dataset --> "*" Protein : proteins click Protein href "../Protein/" Dataset : sample_component_interactions Dataset --> "*" SampleComponentInteraction : sample_component_interactions click SampleComponentInteraction href "../SampleComponentInteraction/" Dataset : sample_components Dataset --> "*" SampleComponent : sample_components click SampleComponent href "../SampleComponent/" Dataset : sample_nucleic_acid_associations Dataset --> "*" SampleNucleicAcidAssociation : sample_nucleic_acid_associations click SampleNucleicAcidAssociation href "../SampleNucleicAcidAssociation/" Dataset : sample_preparations Dataset --> "*" SamplePreparation : sample_preparations click SamplePreparation href "../SamplePreparation/" Dataset : sample_protein_associations Dataset --> "*" SampleProteinAssociation : sample_protein_associations click SampleProteinAssociation href "../SampleProteinAssociation/" Dataset : samples Dataset --> "*" Sample : samples click Sample href "../Sample/" Dataset : small_molecules Dataset --> "*" SmallMolecule : small_molecules click SmallMolecule href "../SmallMolecule/" Dataset : studies Dataset --> "*" Study : studies click Study href "../Study/" Dataset : study_experiment_associations Dataset --> "*" StudyExperimentAssociation : study_experiment_associations click StudyExperimentAssociation href "../StudyExperimentAssociation/" Dataset : study_organization_associations Dataset --> "*" StudyOrganizationAssociation : study_organization_associations click StudyOrganizationAssociation href "../StudyOrganizationAssociation/" Dataset : study_person_associations Dataset --> "*" StudyPersonAssociation : study_person_associations click StudyPersonAssociation href "../StudyPersonAssociation/" Dataset : study_sample_associations Dataset --> "*" StudySampleAssociation : study_sample_associations click StudySampleAssociation href "../StudySampleAssociation/" Dataset : study_workflow_associations Dataset --> "*" StudyWorkflowAssociation : study_workflow_associations click StudyWorkflowAssociation href "../StudyWorkflowAssociation/" Dataset : title Dataset : workflow_experiment_associations Dataset --> "*" WorkflowExperimentAssociation : workflow_experiment_associations click WorkflowExperimentAssociation href "../WorkflowExperimentAssociation/" Dataset : workflow_input_associations Dataset --> "*" WorkflowInputAssociation : workflow_input_associations click WorkflowInputAssociation href "../WorkflowInputAssociation/" Dataset : workflow_output_associations Dataset --> "*" WorkflowOutputAssociation : workflow_output_associations click WorkflowOutputAssociation href "../WorkflowOutputAssociation/" Dataset : workflow_person_associations Dataset --> "*" WorkflowPersonAssociation : workflow_person_associations click WorkflowPersonAssociation href "../WorkflowPersonAssociation/" Dataset : workflow_runs Dataset --> "*" WorkflowRun : workflow_runs click WorkflowRun href "../WorkflowRun/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
keywords *
String		 Keywords or tags describing the dataset for search and categorization direct
studies *
Study		 All studies in this dataset direct
persons *
Person		 All people referenced anywhere in this dataset direct
organizations *
Organization		 All organizations referenced anywhere in this dataset direct
instruments *
Instrument		 All instruments used across studies direct
proteins *
Protein		 All proteins referenced by samples in this dataset, one record per protein direct
protein_constructs *
ProteinConstruct		 All protein constructs direct
nucleic_acids *
NucleicAcid		 All nucleic acids referenced by samples in this dataset, one record per stran... direct
small_molecules *
SmallMolecule		 All small molecules referenced by samples in this dataset, one record per com... direct
samples *
Sample		 All samples across all studies direct
sample_components *
SampleComponent		 What each sample contains, one row per constituent: the inventory behind samp... direct
sample_preparations *
SamplePreparation		 All sample preparations direct
experiment_runs *
ExperimentRun		 All experiment runs (data collection sessions) direct
workflow_runs *
WorkflowRun		 All workflow runs (computational processing) direct
data_files *
DataFile		 All data files direct
images *
Image		 All images direct
study_sample_associations *
StudySampleAssociation		 Links between studies and samples (M:N) direct
study_experiment_associations *
StudyExperimentAssociation		 Links between studies and experiments (M:N) direct
study_workflow_associations *
StudyWorkflowAssociation		 Links between studies and workflows (M:N) direct
experiment_sample_associations *
ExperimentSampleAssociation		 Links between experiments and samples (M:N with role) direct
experiment_instrument_associations *
ExperimentInstrumentAssociation		 Links between experiments and instruments (M:N) direct
sample_protein_associations *
SampleProteinAssociation		 Links between samples and the proteins they contain (M:N with role, copy numb... direct
sample_nucleic_acid_associations *
SampleNucleicAcidAssociation		 Links between samples and the nucleic acids they contain (M:N with role, copy... direct
sample_component_interactions *
SampleComponentInteraction		 Relationships between the components of a sample: which binds, inhibits, pair... direct
workflow_experiment_associations *
WorkflowExperimentAssociation		 Links between workflows and source experiments (M:N) direct
workflow_input_associations *
WorkflowInputAssociation		 Links between workflows and input files direct
workflow_output_associations *
WorkflowOutputAssociation		 Links between workflows and output files direct
study_person_associations *
StudyPersonAssociation		 Links between studies and people (M:N with role) - where authorship lives direct
experiment_person_associations *
ExperimentPersonAssociation		 Links between experiment runs and people (M:N with role) direct
workflow_person_associations *
WorkflowPersonAssociation		 Links between workflow runs and people (M:N with role) direct
study_organization_associations *
StudyOrganizationAssociation		 Links between studies and organizations (M:N with role, award number) direct
person_organization_associations *
PersonOrganizationAssociation		 Links between people and organizations (M:N with role and dates) direct
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 A human-readable name or title for this entity NamedThing
description 0..1
String		 A detailed textual description of this entity NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/lambda/

Mappings

Mapping Type Mapped Value
self lambda:Dataset
native lambda:Dataset
related IHMCIF:_ihm_entry_collection, IHMCIF:_ihm_dataset_group

LinkML Source

Direct

name: Dataset
description: Root container holding flat entity collections and association tables.
  Follows relational database design patterns for structural biology data.
from_schema: http://w3id.org/lambda/
related_mappings:
- IHMCIF:_ihm_entry_collection
- IHMCIF:_ihm_dataset_group
is_a: NamedThing
attributes:
  keywords:
    name: keywords
    description: Keywords or tags describing the dataset for search and categorization
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    - Study
    range: string
    multivalued: true
  studies:
    name: studies
    description: All studies in this dataset
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Study
    multivalued: true
    inlined: true
    inlined_as_list: true
  persons:
    name: persons
    description: All people referenced anywhere in this dataset
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Person
    multivalued: true
    inlined: true
    inlined_as_list: true
  organizations:
    name: organizations
    description: All organizations referenced anywhere in this dataset
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Organization
    multivalued: true
    inlined: true
    inlined_as_list: true
  instruments:
    name: instruments
    description: All instruments used across studies
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Instrument
    multivalued: true
    inlined: true
    inlined_as_list: true
  proteins:
    name: proteins
    description: All proteins referenced by samples in this dataset, one record per
      protein
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Protein
    multivalued: true
    inlined: true
    inlined_as_list: true
  protein_constructs:
    name: protein_constructs
    description: All protein constructs
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: ProteinConstruct
    multivalued: true
    inlined: true
    inlined_as_list: true
  nucleic_acids:
    name: nucleic_acids
    description: All nucleic acids referenced by samples in this dataset, one record
      per strand
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: NucleicAcid
    multivalued: true
    inlined: true
    inlined_as_list: true
  small_molecules:
    name: small_molecules
    description: All small molecules referenced by samples in this dataset, one record
      per compound
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: SmallMolecule
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    description: All samples across all studies
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_components:
    name: sample_components
    description: 'What each sample contains, one row per constituent: the inventory
      behind sample_type'
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: SampleComponent
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_preparations:
    name: sample_preparations
    description: All sample preparations
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: SamplePreparation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_runs:
    name: experiment_runs
    description: All experiment runs (data collection sessions)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: ExperimentRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_runs:
    name: workflow_runs
    description: All workflow runs (computational processing)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: WorkflowRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_files:
    name: data_files
    description: All data files
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: DataFile
    multivalued: true
    inlined: true
    inlined_as_list: true
  images:
    name: images
    description: All images
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: Image
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_sample_associations:
    name: study_sample_associations
    description: Links between studies and samples (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: StudySampleAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_experiment_associations:
    name: study_experiment_associations
    description: Links between studies and experiments (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: StudyExperimentAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_workflow_associations:
    name: study_workflow_associations
    description: Links between studies and workflows (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: StudyWorkflowAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_sample_associations:
    name: experiment_sample_associations
    description: Links between experiments and samples (M:N with role)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: ExperimentSampleAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_instrument_associations:
    name: experiment_instrument_associations
    description: Links between experiments and instruments (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: ExperimentInstrumentAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_protein_associations:
    name: sample_protein_associations
    description: Links between samples and the proteins they contain (M:N with role,
      copy number, construct)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: SampleProteinAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_nucleic_acid_associations:
    name: sample_nucleic_acid_associations
    description: Links between samples and the nucleic acids they contain (M:N with
      role, copy number, structural form, source)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: SampleNucleicAcidAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_component_interactions:
    name: sample_component_interactions
    description: 'Relationships between the components of a sample: which binds, inhibits,
      pairs with or sits in which'
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: SampleComponentInteraction
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_experiment_associations:
    name: workflow_experiment_associations
    description: Links between workflows and source experiments (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: WorkflowExperimentAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_input_associations:
    name: workflow_input_associations
    description: Links between workflows and input files
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: WorkflowInputAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_output_associations:
    name: workflow_output_associations
    description: Links between workflows and output files
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: WorkflowOutputAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_person_associations:
    name: study_person_associations
    description: Links between studies and people (M:N with role) - where authorship
      lives
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: StudyPersonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_person_associations:
    name: experiment_person_associations
    description: Links between experiment runs and people (M:N with role)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: ExperimentPersonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_person_associations:
    name: workflow_person_associations
    description: Links between workflow runs and people (M:N with role)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: WorkflowPersonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_organization_associations:
    name: study_organization_associations
    description: Links between studies and organizations (M:N with role, award number)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: StudyOrganizationAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  person_organization_associations:
    name: person_organization_associations
    description: Links between people and organizations (M:N with role and dates)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    domain_of:
    - Dataset
    range: PersonOrganizationAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
tree_root: true

Induced

name: Dataset
description: Root container holding flat entity collections and association tables.
  Follows relational database design patterns for structural biology data.
from_schema: http://w3id.org/lambda/
related_mappings:
- IHMCIF:_ihm_entry_collection
- IHMCIF:_ihm_dataset_group
is_a: NamedThing
attributes:
  keywords:
    name: keywords
    description: Keywords or tags describing the dataset for search and categorization
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: keywords
    owner: Dataset
    domain_of:
    - Dataset
    - Study
    range: string
    multivalued: true
  studies:
    name: studies
    description: All studies in this dataset
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: studies
    owner: Dataset
    domain_of:
    - Dataset
    range: Study
    multivalued: true
    inlined: true
    inlined_as_list: true
  persons:
    name: persons
    description: All people referenced anywhere in this dataset
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: persons
    owner: Dataset
    domain_of:
    - Dataset
    range: Person
    multivalued: true
    inlined: true
    inlined_as_list: true
  organizations:
    name: organizations
    description: All organizations referenced anywhere in this dataset
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: organizations
    owner: Dataset
    domain_of:
    - Dataset
    range: Organization
    multivalued: true
    inlined: true
    inlined_as_list: true
  instruments:
    name: instruments
    description: All instruments used across studies
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: instruments
    owner: Dataset
    domain_of:
    - Dataset
    range: Instrument
    multivalued: true
    inlined: true
    inlined_as_list: true
  proteins:
    name: proteins
    description: All proteins referenced by samples in this dataset, one record per
      protein
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: proteins
    owner: Dataset
    domain_of:
    - Dataset
    range: Protein
    multivalued: true
    inlined: true
    inlined_as_list: true
  protein_constructs:
    name: protein_constructs
    description: All protein constructs
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: protein_constructs
    owner: Dataset
    domain_of:
    - Dataset
    range: ProteinConstruct
    multivalued: true
    inlined: true
    inlined_as_list: true
  nucleic_acids:
    name: nucleic_acids
    description: All nucleic acids referenced by samples in this dataset, one record
      per strand
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: nucleic_acids
    owner: Dataset
    domain_of:
    - Dataset
    range: NucleicAcid
    multivalued: true
    inlined: true
    inlined_as_list: true
  small_molecules:
    name: small_molecules
    description: All small molecules referenced by samples in this dataset, one record
      per compound
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: small_molecules
    owner: Dataset
    domain_of:
    - Dataset
    range: SmallMolecule
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    description: All samples across all studies
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: samples
    owner: Dataset
    domain_of:
    - Dataset
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_components:
    name: sample_components
    description: 'What each sample contains, one row per constituent: the inventory
      behind sample_type'
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: sample_components
    owner: Dataset
    domain_of:
    - Dataset
    range: SampleComponent
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_preparations:
    name: sample_preparations
    description: All sample preparations
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: sample_preparations
    owner: Dataset
    domain_of:
    - Dataset
    range: SamplePreparation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_runs:
    name: experiment_runs
    description: All experiment runs (data collection sessions)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: experiment_runs
    owner: Dataset
    domain_of:
    - Dataset
    range: ExperimentRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_runs:
    name: workflow_runs
    description: All workflow runs (computational processing)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: workflow_runs
    owner: Dataset
    domain_of:
    - Dataset
    range: WorkflowRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_files:
    name: data_files
    description: All data files
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: data_files
    owner: Dataset
    domain_of:
    - Dataset
    range: DataFile
    multivalued: true
    inlined: true
    inlined_as_list: true
  images:
    name: images
    description: All images
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: images
    owner: Dataset
    domain_of:
    - Dataset
    range: Image
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_sample_associations:
    name: study_sample_associations
    description: Links between studies and samples (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: study_sample_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: StudySampleAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_experiment_associations:
    name: study_experiment_associations
    description: Links between studies and experiments (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: study_experiment_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: StudyExperimentAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_workflow_associations:
    name: study_workflow_associations
    description: Links between studies and workflows (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: study_workflow_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: StudyWorkflowAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_sample_associations:
    name: experiment_sample_associations
    description: Links between experiments and samples (M:N with role)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: experiment_sample_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: ExperimentSampleAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_instrument_associations:
    name: experiment_instrument_associations
    description: Links between experiments and instruments (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: experiment_instrument_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: ExperimentInstrumentAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_protein_associations:
    name: sample_protein_associations
    description: Links between samples and the proteins they contain (M:N with role,
      copy number, construct)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: sample_protein_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: SampleProteinAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_nucleic_acid_associations:
    name: sample_nucleic_acid_associations
    description: Links between samples and the nucleic acids they contain (M:N with
      role, copy number, structural form, source)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: sample_nucleic_acid_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: SampleNucleicAcidAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_component_interactions:
    name: sample_component_interactions
    description: 'Relationships between the components of a sample: which binds, inhibits,
      pairs with or sits in which'
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: sample_component_interactions
    owner: Dataset
    domain_of:
    - Dataset
    range: SampleComponentInteraction
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_experiment_associations:
    name: workflow_experiment_associations
    description: Links between workflows and source experiments (M:N)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: workflow_experiment_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: WorkflowExperimentAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_input_associations:
    name: workflow_input_associations
    description: Links between workflows and input files
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: workflow_input_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: WorkflowInputAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_output_associations:
    name: workflow_output_associations
    description: Links between workflows and output files
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: workflow_output_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: WorkflowOutputAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_person_associations:
    name: study_person_associations
    description: Links between studies and people (M:N with role) - where authorship
      lives
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: study_person_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: StudyPersonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  experiment_person_associations:
    name: experiment_person_associations
    description: Links between experiment runs and people (M:N with role)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: experiment_person_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: ExperimentPersonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_person_associations:
    name: workflow_person_associations
    description: Links between workflow runs and people (M:N with role)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: workflow_person_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: WorkflowPersonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  study_organization_associations:
    name: study_organization_associations
    description: Links between studies and organizations (M:N with role, award number)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: study_organization_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: StudyOrganizationAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  person_organization_associations:
    name: person_organization_associations
    description: Links between people and organizations (M:N with role and dates)
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: person_organization_associations
    owner: Dataset
    domain_of:
    - Dataset
    range: PersonOrganizationAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: http://w3id.org/lambda/
    rank: 1000
    identifier: true
    alias: id
    owner: Dataset
    domain_of:
    - NamedThing
    - Attribute
    range: uriorcurie
    required: true
  title:
    name: title
    description: A human-readable name or title for this entity
    from_schema: http://w3id.org/lambda/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Dataset
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A detailed textual description of this entity
    from_schema: http://w3id.org/lambda/
    rank: 1000
    alias: description
    owner: Dataset
    domain_of:
    - NamedThing
    - AttributeGroup
    - SampleComponentInteraction
    range: string
tree_root: true