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Slot: pdb_ligand_id

wwPDB Chemical Component Dictionary code as a CURIE (pdb.ligand:ATP, pdb.ligand:HEM, pdb.ligand:ZN). Every ligand in a deposited structure has one, so it is the join key between a sample's components and the ligands of the structure it produced.

URI: lambda:pdb_ligand_id Alias: pdb_ligand_id

Applicable Classes

Name Description Modifies Slot
SmallMolecule A small molecule as a chemical entity: a ligand, drug, substrate, cofactor, m... no

Properties

  • Range: Uriorcurie

  • Regex pattern: ^pdb\.ligand:[A-Z0-9]{1,5}$

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/lambda/

Mappings

Mapping Type Mapped Value
self lambda:pdb_ligand_id
native lambda:pdb_ligand_id
exact mmCIF:_chem_comp.id

LinkML Source

name: pdb_ligand_id
description: wwPDB Chemical Component Dictionary code as a CURIE (pdb.ligand:ATP,
  pdb.ligand:HEM, pdb.ligand:ZN). Every ligand in a deposited structure has one, so
  it is the join key between a sample's components and the ligands of the structure
  it produced.
from_schema: http://w3id.org/lambda/
exact_mappings:
- mmCIF:_chem_comp.id
rank: 1000
alias: pdb_ligand_id
owner: SmallMolecule
domain_of:
- SmallMolecule
range: uriorcurie
pattern: ^pdb\.ligand:[A-Z0-9]{1,5}$