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Slot: nucleotide_sequence

Sequence in one-letter code, written 5' to 3'. T for DNA, U for RNA; IUPAC ambiguity codes and I for inosine are allowed. A modified nucleotide is written as its parent base and described in the association's modifications or in cross_references.

URI: lambda:nucleotide_sequence Alias: nucleotide_sequence

Applicable Classes

Name Description Modifies Slot
NucleicAcid A nucleic acid as a molecular entity: one DNA, RNA or hybrid strand, with its... no

Properties

  • Range: String

  • Regex pattern: ^[ACGTURYKMSWBDHVNI]+$

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/lambda/

Mappings

Mapping Type Mapped Value
self lambda:nucleotide_sequence
native lambda:nucleotide_sequence
exact mmCIF:_entity_poly.pdbx_seq_one_letter_code_can

LinkML Source

name: nucleotide_sequence
description: Sequence in one-letter code, written 5' to 3'. T for DNA, U for RNA;
  IUPAC ambiguity codes and I for inosine are allowed. A modified nucleotide is written
  as its parent base and described in the association's modifications or in cross_references.
from_schema: http://w3id.org/lambda/
exact_mappings:
- mmCIF:_entity_poly.pdbx_seq_one_letter_code_can
rank: 1000
alias: nucleotide_sequence
owner: NucleicAcid
domain_of:
- NucleicAcid
range: string
pattern: ^[ACGTURYKMSWBDHVNI]+$