| NamedThing |
A named thing |
no |
| QualityMetrics |
Quality metrics for experiments |
no |
| ExperimentalConditions |
Environmental and experimental conditions |
no |
| ComputeResources |
Computational resources used |
no |
| ProteinAnnotation |
Base class for all protein-related functional and structural annotations |
no |
| BiophysicalProperty |
Measured or calculated biophysical properties |
no |
| MeasurementConditions |
Conditions under which biophysical measurements were made |
no |
| CTFEstimationParameters |
Parameters specific to CTF estimation workflows |
no |
| FTIRImage |
Fourier Transform Infrared (FTIR) spectroscopy image capturing molecular comp... |
no |
| ProteinConstruct |
Detailed information about a protein construct including cloning and sequence... |
no |
| XRayInstrument |
X-ray diffractometer or synchrotron beamline specifications |
no |
| MolecularComposition |
Molecular composition of a sample |
no |
| StorageConditions |
Storage conditions for samples |
no |
| ConformationalState |
Individual conformational state |
no |
| EvolutionaryConservation |
Evolutionary conservation information |
no |
| OntologyTerm |
A term from a controlled vocabulary or ontology |
no |
| Dataset |
Root container holding flat entity collections and association tables |
no |
| CrystallizationConditions |
Crystal growth conditions for X-ray crystallography (NSLS2 Crystallization ma... |
no |
| Instrument |
An instrument used to collect data |
no |
| Image3D |
A 3D volume or tomogram |
no |
| CryoEMInstrument |
Cryo-EM microscope specifications |
no |
| WorkflowRun |
A computational processing workflow execution |
no |
| BufferComposition |
Buffer composition for sample storage |
no |
| Sample |
A biological sample used in structural biology experiments |
no |
| ProteinProteinInteraction |
Protein-protein interactions and interfaces |
no |
| Micrograph |
Motion-corrected micrograph derived from movie |
no |
| XRFImage |
X-ray fluorescence (XRF) image showing elemental distribution |
no |
| FunctionalSite |
Functional sites including catalytic, binding, and regulatory sites |
no |
| FSCCurve |
Fourier Shell Correlation curve data |
no |
| PostTranslationalModification |
Post-translational modifications observed or predicted |
no |
| Image2D |
A 2D image (micrograph, diffraction pattern) |
no |
| ConformationalEnsemble |
Ensemble of conformational states for a protein |
no |
| BeamlineInstrument |
Multi-technique synchrotron beamline that supports multiple experimental meth... |
no |
| ExperimentRun |
An experimental data collection session |
no |
| DatabaseCrossReference |
Cross-references to external databases |
no |
| Image |
An image file from structural biology experiments |
no |
| DataFile |
A data file generated or used in the study |
no |
| DataCollectionStrategy |
Strategy for data collection |
no |
| ParticlePickingParameters |
Parameters specific to particle picking workflows |
no |
| MutationEffect |
Effects of mutations and variants on protein structure and function |
no |
| SAXSPreparation |
SAXS/WAXS specific preparation |
no |
| Movie |
Raw cryo-EM movie with frame-by-frame metadata for motion correction |
no |
| AttributeGroup |
A grouping of related data attributes that form a logical unit |
no |
| OpticalImage |
Visible light optical microscopy or photography image |
no |
| TechniqueSpecificPreparation |
Base class for technique-specific preparation details |
no |
| MotionCorrectionParameters |
Parameters specific to motion correction workflows |
no |
| SamplePreparation |
A process that prepares a sample for imaging |
no |
| AggregatedProteinView |
Aggregated view of all structural and functional data for a protein |
no |
| ImageFeature |
Semantic annotations describing features identified in images using controlle... |
no |
| Study |
A logical grouping of related experiments investigating a research question |
no |
| SAXSInstrument |
SAXS/WAXS instrument specifications |
no |
| FluorescenceImage |
Fluorescence microscopy image capturing specific molecular targets through fl... |
no |
| RefinementParameters |
Parameters specific to 3D refinement workflows |
no |
| CryoEMPreparation |
Cryo-EM specific sample preparation |
no |
| LigandInteraction |
Small molecule/ligand interactions with proteins |
no |
| XRayPreparation |
X-ray crystallography specific preparation |
no |
| StructuralFeature |
Structural features and properties of protein regions |
no |