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Class: XRayInstrument

X-ray diffractometer or synchrotron beamline specifications

URI: lambdaber:XRayInstrument

classDiagram class XRayInstrument click XRayInstrument href "../XRayInstrument/" Instrument <|-- XRayInstrument click Instrument href "../Instrument/" XRayInstrument : beam_size_max XRayInstrument : beam_size_min XRayInstrument : beamline_id XRayInstrument : crystal_cooling_capability XRayInstrument : current_status XRayInstrument --> "0..1" InstrumentStatusEnum : current_status click InstrumentStatusEnum href "../InstrumentStatusEnum/" XRayInstrument : description XRayInstrument : detector_manufacturer XRayInstrument : detector_model XRayInstrument : detector_technology XRayInstrument --> "0..1" DetectorTechnologyEnum : detector_technology click DetectorTechnologyEnum href "../DetectorTechnologyEnum/" XRayInstrument : energy_max XRayInstrument : energy_min XRayInstrument : facility_name XRayInstrument --> "0..1" FacilityEnum : facility_name click FacilityEnum href "../FacilityEnum/" XRayInstrument : facility_ror XRayInstrument : flux_density XRayInstrument : goniometer_type XRayInstrument : id XRayInstrument : installation_date XRayInstrument : instrument_category XRayInstrument --> "0..1" InstrumentCategoryEnum : instrument_category click InstrumentCategoryEnum href "../InstrumentCategoryEnum/" XRayInstrument : instrument_code XRayInstrument : manufacturer XRayInstrument : model XRayInstrument : monochromator_type XRayInstrument : source_type XRayInstrument --> "0..1" XRaySourceTypeEnum : source_type click XRaySourceTypeEnum href "../XRaySourceTypeEnum/" XRayInstrument : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
source_type 0..1
XRaySourceTypeEnum		 Type of X-ray source direct
detector_technology 0..1
DetectorTechnologyEnum		 Generic detector technology type direct
detector_manufacturer 0..1
String		 Detector manufacturer (e direct
detector_model 0..1
String		 Detector model (e direct
energy_min 0..1
Float		 Minimum X-ray energy in keV direct
energy_max 0..1
Float		 Maximum X-ray energy in keV direct
beam_size_min 0..1
Float		 Minimum beam size in micrometers direct
beam_size_max 0..1
Float		 Maximum beam size in micrometers direct
flux_density 0..1
Float		 Photon flux density in photons/s/mm² direct
monochromator_type 0..1
String		 Type of monochromator direct
goniometer_type 0..1
String		 Type of goniometer direct
crystal_cooling_capability 0..1
Boolean		 Crystal cooling system available direct
instrument_code 1
String		 Human-friendly facility or laboratory identifier for the instrument (e Instrument
instrument_category 0..1
InstrumentCategoryEnum		 Category distinguishing beamlines from laboratory equipment Instrument
facility_name 0..1
FacilityEnum		 Name of the research facility where the instrument is located Instrument
facility_ror 0..1
Uriorcurie		 Research Organization Registry (ROR) identifier for the facility Instrument
beamline_id 0..1
String		 Beamline identifier at synchrotron/neutron facility Instrument
manufacturer 0..1
String		 Instrument manufacturer Instrument
model 0..1
String		 Instrument model Instrument
installation_date 0..1
String		 Date of instrument installation Instrument
current_status 0..1
InstrumentStatusEnum		 Current operational status Instrument
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 A human-readable name or title for this entity NamedThing
description 0..1
String		 A detailed textual description of this entity NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:XRayInstrument
native lambdaber:XRayInstrument

LinkML Source

Direct

name: XRayInstrument
description: X-ray diffractometer or synchrotron beamline specifications
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Instrument
attributes:
  source_type:
    name: source_type
    description: Type of X-ray source
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    - BeamlineInstrument
    - XRFImage
    range: XRaySourceTypeEnum
  detector_technology:
    name: detector_technology
    description: Generic detector technology type
    comments:
    - Use this for technology classification (e.g., hybrid_photon_counting, ccd)
    - 'Maps to CBF: Detector (may contain model name)'
    - 'Maps to PDB: _diffrn_detector.type'
    - See detector_manufacturer and detector_model for specific equipment details
    from_schema: https://w3id.org/lambda-ber-schema/
    slot_uri: nsls2:Detector
    domain_of:
    - CryoEMInstrument
    - XRayInstrument
    - XRFImage
    range: DetectorTechnologyEnum
  detector_manufacturer:
    name: detector_manufacturer
    description: Detector manufacturer (e.g., Dectris, Bruker, Rigaku, Rayonix)
    comments:
    - 'Examples: Dectris, Bruker, Rigaku, Rayonix, ADSC, MAR Research'
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - CryoEMInstrument
    - XRayInstrument
    range: string
  detector_model:
    name: detector_model
    description: Detector model (e.g., EIGER2 X 16M, PILATUS3 X 6M, PHOTON III)
    comments:
    - 'Examples: EIGER2 X 16M, PILATUS3 X 6M, PHOTON III, HyPix-6000HE'
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - CryoEMInstrument
    - XRayInstrument
    - XRFImage
    range: string
  energy_min:
    name: energy_min
    description: Minimum X-ray energy in keV
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    - BeamlineInstrument
    range: float
  energy_max:
    name: energy_max
    description: Maximum X-ray energy in keV
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    - BeamlineInstrument
    range: float
  beam_size_min:
    name: beam_size_min
    description: Minimum beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    range: float
  beam_size_max:
    name: beam_size_max
    description: Maximum beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    range: float
  flux_density:
    name: flux_density
    description: Photon flux density in photons/s/mm²
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    range: float
  monochromator_type:
    name: monochromator_type
    description: Type of monochromator
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
  goniometer_type:
    name: goniometer_type
    description: Type of goniometer
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
  crystal_cooling_capability:
    name: crystal_cooling_capability
    description: Crystal cooling system available
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRayInstrument
    range: boolean

Induced

name: XRayInstrument
description: X-ray diffractometer or synchrotron beamline specifications
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Instrument
attributes:
  source_type:
    name: source_type
    description: Type of X-ray source
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: source_type
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    - BeamlineInstrument
    - XRFImage
    range: XRaySourceTypeEnum
  detector_technology:
    name: detector_technology
    description: Generic detector technology type
    comments:
    - Use this for technology classification (e.g., hybrid_photon_counting, ccd)
    - 'Maps to CBF: Detector (may contain model name)'
    - 'Maps to PDB: _diffrn_detector.type'
    - See detector_manufacturer and detector_model for specific equipment details
    from_schema: https://w3id.org/lambda-ber-schema/
    slot_uri: nsls2:Detector
    alias: detector_technology
    owner: XRayInstrument
    domain_of:
    - CryoEMInstrument
    - XRayInstrument
    - XRFImage
    range: DetectorTechnologyEnum
  detector_manufacturer:
    name: detector_manufacturer
    description: Detector manufacturer (e.g., Dectris, Bruker, Rigaku, Rayonix)
    comments:
    - 'Examples: Dectris, Bruker, Rigaku, Rayonix, ADSC, MAR Research'
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: detector_manufacturer
    owner: XRayInstrument
    domain_of:
    - CryoEMInstrument
    - XRayInstrument
    range: string
  detector_model:
    name: detector_model
    description: Detector model (e.g., EIGER2 X 16M, PILATUS3 X 6M, PHOTON III)
    comments:
    - 'Examples: EIGER2 X 16M, PILATUS3 X 6M, PHOTON III, HyPix-6000HE'
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: detector_model
    owner: XRayInstrument
    domain_of:
    - CryoEMInstrument
    - XRayInstrument
    - XRFImage
    range: string
  energy_min:
    name: energy_min
    description: Minimum X-ray energy in keV
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: energy_min
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    - BeamlineInstrument
    range: float
  energy_max:
    name: energy_max
    description: Maximum X-ray energy in keV
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: energy_max
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    - BeamlineInstrument
    range: float
  beam_size_min:
    name: beam_size_min
    description: Minimum beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_size_min
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    range: float
  beam_size_max:
    name: beam_size_max
    description: Maximum beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_size_max
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    range: float
  flux_density:
    name: flux_density
    description: Photon flux density in photons/s/mm²
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: flux_density
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    range: float
  monochromator_type:
    name: monochromator_type
    description: Type of monochromator
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: monochromator_type
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    range: string
  goniometer_type:
    name: goniometer_type
    description: Type of goniometer
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: goniometer_type
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    range: string
  crystal_cooling_capability:
    name: crystal_cooling_capability
    description: Crystal cooling system available
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: crystal_cooling_capability
    owner: XRayInstrument
    domain_of:
    - XRayInstrument
    range: boolean
  instrument_code:
    name: instrument_code
    description: Human-friendly facility or laboratory identifier for the instrument
      (e.g., 'TITAN-KRIOS-1', 'ALS-12.3.1-SIBYLS', 'RIGAKU-FR-E'). Used for local
      reference and equipment tracking.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_code
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: string
    required: true
  instrument_category:
    name: instrument_category
    description: Category distinguishing beamlines from laboratory equipment
    comments:
    - Use SYNCHROTRON_BEAMLINE for synchrotron beamlines
    - Use ELECTRON_MICROSCOPE for cryo-EM instruments
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_category
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: InstrumentCategoryEnum
  facility_name:
    name: facility_name
    description: Name of the research facility where the instrument is located
    comments:
    - Select from the standardized list of major synchrotron facilities
    - Leave empty for laboratory-based instruments
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: facility_name
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: FacilityEnum
  facility_ror:
    name: facility_ror
    description: Research Organization Registry (ROR) identifier for the facility
    comments:
    - Persistent identifier for the facility organization
    - 'Example: https://ror.org/02jbv0t02 (Lawrence Berkeley National Laboratory)'
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: facility_ror
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: uriorcurie
    pattern: ^https://ror\.org/\w+$
  beamline_id:
    name: beamline_id
    description: Beamline identifier at synchrotron/neutron facility
    comments:
    - Use facility-specific naming convention
    - 'Examples: ''12.3.1'' (ALS), ''17-ID-1'' (NSLS-II), ''I04'' (Diamond)'
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: mmCIF:_diffrn_source.pdbx_synchrotron_beamline
    alias: beamline_id
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: string
  manufacturer:
    name: manufacturer
    description: Instrument manufacturer
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: manufacturer
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: string
  model:
    name: model
    description: Instrument model
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: model
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: string
  installation_date:
    name: installation_date
    description: Date of instrument installation
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: installation_date
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: string
  current_status:
    name: current_status
    description: Current operational status
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: current_status
    owner: XRayInstrument
    domain_of:
    - Instrument
    range: InstrumentStatusEnum
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: XRayInstrument
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    description: A human-readable name or title for this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: XRayInstrument
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A detailed textual description of this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: XRayInstrument
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string