Enum: WorkflowTypeEnum

Types of processing workflows

Permissible Values

Value	Meaning	Description
motion_correction	None	Motion correction for cryo-EM
ctf_estimation	None	CTF estimation
particle_picking	None	Particle picking
classification_2d	None	2D classification
classification_3d	None	3D classification
refinement	None	3D refinement
model_building	None	Atomic model building
phasing	None	Phase determination
integration	None	Data integration
scaling	None	Data scaling
saxs_analysis	None	SAXS data analysis
xas_normalization	None	XAS data normalization and background subtraction
xanes_analysis	None	XANES spectral analysis and edge fitting
exafs_analysis	None	EXAFS data analysis and shell fitting
em_2d_classification	None	EM 2D classification
mass_spec_deconvolution	None	Mass spectrometry deconvolution
particle_extraction	None	Particle extraction from micrographs
ab_initio	None	Ab initio 3D reconstruction
postprocessing	None	Map post-processing and sharpening
map_validation	None	3D map validation
model_refinement	None	Atomic model refinement
model_validation	None	Model validation and quality assessment

Slots

Name	Description
workflow_type	Type of processing workflow

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/lambda/

LinkML Source

name: WorkflowTypeEnum
description: Types of processing workflows
from_schema: http://w3id.org/lambda/
rank: 1000
permissible_values:
  motion_correction:
    text: motion_correction
    description: Motion correction for cryo-EM
  ctf_estimation:
    text: ctf_estimation
    description: CTF estimation
  particle_picking:
    text: particle_picking
    description: Particle picking
  classification_2d:
    text: classification_2d
    description: 2D classification
  classification_3d:
    text: classification_3d
    description: 3D classification
  refinement:
    text: refinement
    description: 3D refinement
  model_building:
    text: model_building
    description: Atomic model building
  phasing:
    text: phasing
    description: Phase determination
  integration:
    text: integration
    description: Data integration
  scaling:
    text: scaling
    description: Data scaling
  saxs_analysis:
    text: saxs_analysis
    description: SAXS data analysis
  xas_normalization:
    text: xas_normalization
    description: XAS data normalization and background subtraction
  xanes_analysis:
    text: xanes_analysis
    description: XANES spectral analysis and edge fitting
  exafs_analysis:
    text: exafs_analysis
    description: EXAFS data analysis and shell fitting
    comments:
    - Includes Fourier transform, back-transform, and coordination shell fitting
  em_2d_classification:
    text: em_2d_classification
    description: EM 2D classification
  mass_spec_deconvolution:
    text: mass_spec_deconvolution
    description: Mass spectrometry deconvolution
  particle_extraction:
    text: particle_extraction
    description: Particle extraction from micrographs
  ab_initio:
    text: ab_initio
    description: Ab initio 3D reconstruction
  postprocessing:
    text: postprocessing
    description: Map post-processing and sharpening
  map_validation:
    text: map_validation
    description: 3D map validation
  model_refinement:
    text: model_refinement
    description: Atomic model refinement
  model_validation:
    text: model_validation
    description: Model validation and quality assessment