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Class: Study

A focused research investigation that groups related samples, experiments, and data collection around a specific biological question or hypothesis

URI: lambdaber:Study

classDiagram class Study click Study href "../Study/" NamedThing <|-- Study click NamedThing href "../NamedThing/" Study : aggregated_protein_views Study --> "*" AggregatedProteinView : aggregated_protein_views click AggregatedProteinView href "../AggregatedProteinView/" Study : data_files Study --> "*" DataFile : data_files click DataFile href "../DataFile/" Study : description Study : id Study : images Study --> "*" Image : images click Image href "../Image/" Study : instrument_runs Study --> "*" ExperimentRun : instrument_runs click ExperimentRun href "../ExperimentRun/" Study : protein_constructs Study --> "*" ProteinConstruct : protein_constructs click ProteinConstruct href "../ProteinConstruct/" Study : sample_preparations Study --> "*" SamplePreparation : sample_preparations click SamplePreparation href "../SamplePreparation/" Study : samples Study --> "*" Sample : samples click Sample href "../Sample/" Study : title Study : workflow_runs Study --> "*" WorkflowRun : workflow_runs click WorkflowRun href "../WorkflowRun/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
protein_constructs *
ProteinConstruct		 Protein constructs and cloning information direct
samples *
Sample		 Experimental samples used in this study, including biological samples direct
sample_preparations *
SamplePreparation		 Sample preparation procedures performed in this study direct
instrument_runs *
ExperimentRun		 Experimental data collection runs performed in this study direct
workflow_runs *
WorkflowRun		 Computational workflow executions for data processing in this study direct
data_files *
DataFile		 Data files generated or used in this study direct
images *
Image		 Images acquired or generated in this study direct
aggregated_protein_views *
AggregatedProteinView		 Aggregated functional and structural annotations for proteins in this study direct
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 A human-readable name or title for this entity NamedThing
description 0..1
String		 A detailed textual description of this entity NamedThing

Usages

used by used in type used
Dataset studies range Study

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:Study
native lambdaber:Study

LinkML Source

Direct

name: Study
description: A focused research investigation that groups related samples, experiments,
  and data collection around a specific biological question or hypothesis
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  protein_constructs:
    name: protein_constructs
    description: Protein constructs and cloning information
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: ProteinConstruct
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    description: 'Experimental samples used in this study, including biological samples '
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_preparations:
    name: sample_preparations
    description: Sample preparation procedures performed in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: SamplePreparation
    multivalued: true
    inlined: true
    inlined_as_list: true
  instrument_runs:
    name: instrument_runs
    description: Experimental data collection runs performed in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: ExperimentRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_runs:
    name: workflow_runs
    description: Computational workflow executions for data processing in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: WorkflowRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_files:
    name: data_files
    description: Data files generated or used in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: DataFile
    multivalued: true
    inlined: true
    inlined_as_list: true
  images:
    name: images
    description: Images acquired or generated in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: Image
    multivalued: true
    inlined: true
    inlined_as_list: true
  aggregated_protein_views:
    name: aggregated_protein_views
    description: Aggregated functional and structural annotations for proteins in
      this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: AggregatedProteinView
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: Study
description: A focused research investigation that groups related samples, experiments,
  and data collection around a specific biological question or hypothesis
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  protein_constructs:
    name: protein_constructs
    description: Protein constructs and cloning information
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: protein_constructs
    owner: Study
    domain_of:
    - Study
    range: ProteinConstruct
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    description: 'Experimental samples used in this study, including biological samples '
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: samples
    owner: Study
    domain_of:
    - Study
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_preparations:
    name: sample_preparations
    description: Sample preparation procedures performed in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: sample_preparations
    owner: Study
    domain_of:
    - Study
    range: SamplePreparation
    multivalued: true
    inlined: true
    inlined_as_list: true
  instrument_runs:
    name: instrument_runs
    description: Experimental data collection runs performed in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_runs
    owner: Study
    domain_of:
    - Study
    range: ExperimentRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_runs:
    name: workflow_runs
    description: Computational workflow executions for data processing in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: workflow_runs
    owner: Study
    domain_of:
    - Study
    range: WorkflowRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_files:
    name: data_files
    description: Data files generated or used in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: data_files
    owner: Study
    domain_of:
    - Study
    range: DataFile
    multivalued: true
    inlined: true
    inlined_as_list: true
  images:
    name: images
    description: Images acquired or generated in this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: images
    owner: Study
    domain_of:
    - Study
    range: Image
    multivalued: true
    inlined: true
    inlined_as_list: true
  aggregated_protein_views:
    name: aggregated_protein_views
    description: Aggregated functional and structural annotations for proteins in
      this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: aggregated_protein_views
    owner: Study
    domain_of:
    - Study
    range: AggregatedProteinView
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: Study
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    description: A human-readable name or title for this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Study
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A detailed textual description of this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: Study
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string