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Class: Instrument

An instrument used to collect data

URI: lambdaber:Instrument

classDiagram class Instrument click Instrument href "../Instrument/" NamedThing <|-- Instrument click NamedThing href "../NamedThing/" Instrument <|-- CryoEMInstrument click CryoEMInstrument href "../CryoEMInstrument/" Instrument <|-- XRayInstrument click XRayInstrument href "../XRayInstrument/" Instrument <|-- SAXSInstrument click SAXSInstrument href "../SAXSInstrument/" Instrument <|-- BeamlineInstrument click BeamlineInstrument href "../BeamlineInstrument/" Instrument : beamline_id Instrument : current_status Instrument --> "0..1" InstrumentStatusEnum : current_status click InstrumentStatusEnum href "../InstrumentStatusEnum/" Instrument : description Instrument : facility_name Instrument --> "0..1" FacilityEnum : facility_name click FacilityEnum href "../FacilityEnum/" Instrument : facility_ror Instrument : id Instrument : installation_date Instrument : instrument_category Instrument --> "0..1" InstrumentCategoryEnum : instrument_category click InstrumentCategoryEnum href "../InstrumentCategoryEnum/" Instrument : instrument_code Instrument : manufacturer Instrument : model Instrument : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
instrument_code 1
String		 Human-friendly facility or laboratory identifier for the instrument (e direct
instrument_category 0..1
InstrumentCategoryEnum		 Category distinguishing beamlines from laboratory equipment direct
facility_name 0..1
FacilityEnum		 Name of the research facility where the instrument is located direct
facility_ror 0..1
Uriorcurie		 Research Organization Registry (ROR) identifier for the facility direct
beamline_id 0..1
String		 Beamline identifier at synchrotron/neutron facility direct
manufacturer 0..1
String		 Instrument manufacturer direct
model 0..1
String		 Instrument model direct
installation_date 0..1
String		 Date of instrument installation direct
current_status 0..1
InstrumentStatusEnum		 Current operational status direct
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 A human-readable name or title for this entity NamedThing
description 0..1
String		 A detailed textual description of this entity NamedThing

Usages

used by used in type used
Dataset instruments range Instrument
ExperimentRun instrument_id range Instrument

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:Instrument
native lambdaber:Instrument

LinkML Source

Direct

name: Instrument
description: An instrument used to collect data
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  instrument_code:
    name: instrument_code
    description: Human-friendly facility or laboratory identifier for the instrument
      (e.g., 'TITAN-KRIOS-1', 'ALS-12.3.1-SIBYLS', 'RIGAKU-FR-E'). Used for local
      reference and equipment tracking.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
    required: true
  instrument_category:
    name: instrument_category
    description: Category distinguishing beamlines from laboratory equipment
    comments:
    - Use SYNCHROTRON_BEAMLINE for synchrotron beamlines
    - Use ELECTRON_MICROSCOPE for cryo-EM instruments
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
    range: InstrumentCategoryEnum
  facility_name:
    name: facility_name
    description: Name of the research facility where the instrument is located
    comments:
    - Select from the standardized list of major synchrotron facilities
    - Leave empty for laboratory-based instruments
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
    range: FacilityEnum
  facility_ror:
    name: facility_ror
    description: Research Organization Registry (ROR) identifier for the facility
    comments:
    - Persistent identifier for the facility organization
    - 'Example: https://ror.org/02jbv0t02 (Lawrence Berkeley National Laboratory)'
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
    range: uriorcurie
    pattern: ^https://ror\.org/\w+$
  beamline_id:
    name: beamline_id
    description: Beamline identifier at synchrotron/neutron facility
    comments:
    - Use facility-specific naming convention
    - 'Examples: ''12.3.1'' (ALS), ''17-ID-1'' (NSLS-II), ''I04'' (Diamond)'
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: mmCIF:_diffrn_source.pdbx_synchrotron_beamline
    domain_of:
    - Instrument
    range: string
  manufacturer:
    name: manufacturer
    description: Instrument manufacturer
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
  model:
    name: model
    description: Instrument model
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
  installation_date:
    name: installation_date
    description: Date of instrument installation
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
    range: string
  current_status:
    name: current_status
    description: Current operational status
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Instrument
    range: InstrumentStatusEnum

Induced

name: Instrument
description: An instrument used to collect data
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  instrument_code:
    name: instrument_code
    description: Human-friendly facility or laboratory identifier for the instrument
      (e.g., 'TITAN-KRIOS-1', 'ALS-12.3.1-SIBYLS', 'RIGAKU-FR-E'). Used for local
      reference and equipment tracking.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_code
    owner: Instrument
    domain_of:
    - Instrument
    range: string
    required: true
  instrument_category:
    name: instrument_category
    description: Category distinguishing beamlines from laboratory equipment
    comments:
    - Use SYNCHROTRON_BEAMLINE for synchrotron beamlines
    - Use ELECTRON_MICROSCOPE for cryo-EM instruments
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_category
    owner: Instrument
    domain_of:
    - Instrument
    range: InstrumentCategoryEnum
  facility_name:
    name: facility_name
    description: Name of the research facility where the instrument is located
    comments:
    - Select from the standardized list of major synchrotron facilities
    - Leave empty for laboratory-based instruments
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: facility_name
    owner: Instrument
    domain_of:
    - Instrument
    range: FacilityEnum
  facility_ror:
    name: facility_ror
    description: Research Organization Registry (ROR) identifier for the facility
    comments:
    - Persistent identifier for the facility organization
    - 'Example: https://ror.org/02jbv0t02 (Lawrence Berkeley National Laboratory)'
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: facility_ror
    owner: Instrument
    domain_of:
    - Instrument
    range: uriorcurie
    pattern: ^https://ror\.org/\w+$
  beamline_id:
    name: beamline_id
    description: Beamline identifier at synchrotron/neutron facility
    comments:
    - Use facility-specific naming convention
    - 'Examples: ''12.3.1'' (ALS), ''17-ID-1'' (NSLS-II), ''I04'' (Diamond)'
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: mmCIF:_diffrn_source.pdbx_synchrotron_beamline
    alias: beamline_id
    owner: Instrument
    domain_of:
    - Instrument
    range: string
  manufacturer:
    name: manufacturer
    description: Instrument manufacturer
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: manufacturer
    owner: Instrument
    domain_of:
    - Instrument
    range: string
  model:
    name: model
    description: Instrument model
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: model
    owner: Instrument
    domain_of:
    - Instrument
    range: string
  installation_date:
    name: installation_date
    description: Date of instrument installation
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: installation_date
    owner: Instrument
    domain_of:
    - Instrument
    range: string
  current_status:
    name: current_status
    description: Current operational status
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: current_status
    owner: Instrument
    domain_of:
    - Instrument
    range: InstrumentStatusEnum
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: Instrument
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    description: A human-readable name or title for this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Instrument
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A detailed textual description of this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: Instrument
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string