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Class: FluorescenceImage

Fluorescence microscopy image capturing specific molecular targets through fluorescent labeling

URI: lambdaber:FluorescenceImage

classDiagram class FluorescenceImage click FluorescenceImage href "../FluorescenceImage/" Image2D <|-- FluorescenceImage click Image2D href "../Image2D/" FluorescenceImage : acquisition_date FluorescenceImage : astigmatism FluorescenceImage --> "0..1" QuantityValue : astigmatism click QuantityValue href "../QuantityValue/" FluorescenceImage : channel_name FluorescenceImage : defocus FluorescenceImage --> "0..1" QuantityValue : defocus click QuantityValue href "../QuantityValue/" FluorescenceImage : description FluorescenceImage : dimensions_x FluorescenceImage --> "0..1" QuantityValue : dimensions_x click QuantityValue href "../QuantityValue/" FluorescenceImage : dimensions_y FluorescenceImage --> "0..1" QuantityValue : dimensions_y click QuantityValue href "../QuantityValue/" FluorescenceImage : dose FluorescenceImage --> "0..1" QuantityValue : dose click QuantityValue href "../QuantityValue/" FluorescenceImage : emission_filter FluorescenceImage : emission_wavelength FluorescenceImage --> "0..1" QuantityValue : emission_wavelength click QuantityValue href "../QuantityValue/" FluorescenceImage : excitation_filter FluorescenceImage : excitation_wavelength FluorescenceImage --> "0..1" QuantityValue : excitation_wavelength click QuantityValue href "../QuantityValue/" FluorescenceImage : exposure_time FluorescenceImage --> "0..1" QuantityValue : exposure_time click QuantityValue href "../QuantityValue/" FluorescenceImage : file_name FluorescenceImage : fluorophore FluorescenceImage : id FluorescenceImage : laser_power FluorescenceImage --> "0..1" QuantityValue : laser_power click QuantityValue href "../QuantityValue/" FluorescenceImage : pinhole_size FluorescenceImage --> "0..1" QuantityValue : pinhole_size click QuantityValue href "../QuantityValue/" FluorescenceImage : pixel_size FluorescenceImage --> "0..1" QuantityValue : pixel_size click QuantityValue href "../QuantityValue/" FluorescenceImage : quantum_yield FluorescenceImage --> "0..1" QuantityValue : quantum_yield click QuantityValue href "../QuantityValue/" FluorescenceImage : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
excitation_wavelength 0..1
QuantityValue		 Excitation wavelength, typically specified in nanometers direct
emission_wavelength 0..1
QuantityValue		 Emission wavelength, typically specified in nanometers direct
excitation_filter 0..1
String		 Specifications of the excitation filter direct
emission_filter 0..1
String		 Specifications of the emission filter direct
fluorophore 0..1
String		 Name or type of fluorophore used direct
channel_name 0..1
String		 Name of the fluorescence channel (e direct
laser_power 0..1
QuantityValue		 Laser power, typically specified in milliwatts direct
pinhole_size 0..1
QuantityValue		 Pinhole size, typically specified in Airy units for confocal microscopy direct
quantum_yield 0..1
QuantityValue		 Quantum yield of the fluorophore direct
defocus 0..1
QuantityValue		 Defocus value, typically specified in micrometers Image2D
astigmatism 0..1
QuantityValue		 Astigmatism value, typically specified in Angstroms Image2D
file_name 1
String		 Image file name Image
acquisition_date 0..1
String		 Date image was acquired Image
pixel_size 0..1
QuantityValue		 Pixel size, typically specified in Angstroms Image
dimensions_x 0..1
QuantityValue		 Image width, typically specified in pixels Image
dimensions_y 0..1
QuantityValue		 Image height, typically specified in pixels Image
exposure_time 0..1
QuantityValue		 Exposure time, typically specified in seconds Image
dose 0..1
QuantityValue		 Electron dose in e-/Ų Image
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 A human-readable name or title for this entity NamedThing
description 0..1
String		 A detailed textual description of this entity NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:FluorescenceImage
native lambdaber:FluorescenceImage

LinkML Source

Direct

name: FluorescenceImage
description: Fluorescence microscopy image capturing specific molecular targets through
  fluorescent labeling
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image2D
attributes:
  excitation_wavelength:
    name: excitation_wavelength
    description: Excitation wavelength, typically specified in nanometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  emission_wavelength:
    name: emission_wavelength
    description: Emission wavelength, typically specified in nanometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  excitation_filter:
    name: excitation_filter
    description: Specifications of the excitation filter
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  emission_filter:
    name: emission_filter
    description: Specifications of the emission filter
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  fluorophore:
    name: fluorophore
    description: Name or type of fluorophore used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  channel_name:
    name: channel_name
    description: Name of the fluorescence channel (e.g., DAPI, GFP, RFP)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  laser_power:
    name: laser_power
    description: Laser power, typically specified in milliwatts. Data providers may
      specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  pinhole_size:
    name: pinhole_size
    description: Pinhole size, typically specified in Airy units for confocal microscopy.
      Data providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  quantum_yield:
    name: quantum_yield
    description: Quantum yield of the fluorophore
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true

Induced

name: FluorescenceImage
description: Fluorescence microscopy image capturing specific molecular targets through
  fluorescent labeling
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image2D
attributes:
  excitation_wavelength:
    name: excitation_wavelength
    description: Excitation wavelength, typically specified in nanometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: excitation_wavelength
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  emission_wavelength:
    name: emission_wavelength
    description: Emission wavelength, typically specified in nanometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: emission_wavelength
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  excitation_filter:
    name: excitation_filter
    description: Specifications of the excitation filter
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: excitation_filter
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  emission_filter:
    name: emission_filter
    description: Specifications of the emission filter
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: emission_filter
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  fluorophore:
    name: fluorophore
    description: Name or type of fluorophore used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: fluorophore
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  channel_name:
    name: channel_name
    description: Name of the fluorescence channel (e.g., DAPI, GFP, RFP)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: channel_name
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  laser_power:
    name: laser_power
    description: Laser power, typically specified in milliwatts. Data providers may
      specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: laser_power
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  pinhole_size:
    name: pinhole_size
    description: Pinhole size, typically specified in Airy units for confocal microscopy.
      Data providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: pinhole_size
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  quantum_yield:
    name: quantum_yield
    description: Quantum yield of the fluorophore
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: quantum_yield
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: QuantityValue
    inlined: true
  defocus:
    name: defocus
    description: Defocus value, typically specified in micrometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus
    owner: FluorescenceImage
    domain_of:
    - Image2D
    range: QuantityValue
    inlined: true
  astigmatism:
    name: astigmatism
    description: Astigmatism value, typically specified in Angstroms. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: astigmatism
    owner: FluorescenceImage
    domain_of:
    - Image2D
    range: QuantityValue
    inlined: true
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: file_name
    owner: FluorescenceImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: acquisition_date
    owner: FluorescenceImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size, typically specified in Angstroms. Data providers may
      specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: pixel_size
    owner: FluorescenceImage
    domain_of:
    - Image
    - RefinementParameters
    range: QuantityValue
    inlined: true
  dimensions_x:
    name: dimensions_x
    description: Image width, typically specified in pixels. Data providers may specify
      alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_x
    owner: FluorescenceImage
    domain_of:
    - Image
    range: QuantityValue
    inlined: true
  dimensions_y:
    name: dimensions_y
    description: Image height, typically specified in pixels. Data providers may specify
      alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_y
    owner: FluorescenceImage
    domain_of:
    - Image
    range: QuantityValue
    inlined: true
  exposure_time:
    name: exposure_time
    description: Exposure time, typically specified in seconds. Data providers may
      specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: exposure_time
    owner: FluorescenceImage
    domain_of:
    - ExperimentRun
    - Image
    - ExperimentalConditions
    range: QuantityValue
    inlined: true
  dose:
    name: dose
    description: Electron dose in e-/Ų
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dose
    owner: FluorescenceImage
    domain_of:
    - Image
    - Micrograph
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: FluorescenceImage
    domain_of:
    - NamedThing
    - Attribute
    range: uriorcurie
    required: true
  title:
    name: title
    description: A human-readable name or title for this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: FluorescenceImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A detailed textual description of this entity
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: FluorescenceImage
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string