Class: ExperimentSampleAssociation

M:N link between ExperimentRun and Sample with role metadata

URI: lambdaber:ExperimentSampleAssociation

classDiagram class ExperimentSampleAssociation click ExperimentSampleAssociation href "../ExperimentSampleAssociation/" ExperimentSampleAssociation : experiment_id ExperimentSampleAssociation --> "1" ExperimentRun : experiment_id click ExperimentRun href "../ExperimentRun/" ExperimentSampleAssociation : preparation_id ExperimentSampleAssociation --> "0..1" SamplePreparation : preparation_id click SamplePreparation href "../SamplePreparation/" ExperimentSampleAssociation : role ExperimentSampleAssociation --> "0..1" ExperimentSampleRoleEnum : role click ExperimentSampleRoleEnum href "../ExperimentSampleRoleEnum/" ExperimentSampleAssociation : sample_id ExperimentSampleAssociation --> "1" Sample : sample_id click Sample href "../Sample/"

Slots

Name	Cardinality and Range	Description	Inheritance
experiment_id	1 ExperimentRun	Reference to the experiment run	direct
sample_id	1 Sample	Reference to the sample	direct
role	0..1 ExperimentSampleRoleEnum	Role of sample in experiment	direct
preparation_id	0..1 SamplePreparation	Specific preparation used for this sample in this experiment	direct

Usages

used by	used in	type	used
Dataset	experiment_sample_associations	range	ExperimentSampleAssociation

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type	Mapped Value
self	lambdaber:ExperimentSampleAssociation
native	lambdaber:ExperimentSampleAssociation

LinkML Source

Direct

name: ExperimentSampleAssociation
description: M:N link between ExperimentRun and Sample with role metadata
from_schema: https://w3id.org/lambda-ber-schema/
attributes:
  experiment_id:
    name: experiment_id
    description: Reference to the experiment run
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - StudyExperimentAssociation
    - ExperimentSampleAssociation
    - ExperimentInstrumentAssociation
    - WorkflowExperimentAssociation
    range: ExperimentRun
    required: true
  sample_id:
    name: sample_id
    description: Reference to the sample
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - SamplePreparation
    - StudySampleAssociation
    - ExperimentSampleAssociation
    range: Sample
    required: true
  role:
    name: role
    description: Role of sample in experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - StudySampleAssociation
    - ExperimentSampleAssociation
    - ExperimentInstrumentAssociation
    range: ExperimentSampleRoleEnum
  preparation_id:
    name: preparation_id
    description: Specific preparation used for this sample in this experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentSampleAssociation
    range: SamplePreparation

Induced

name: ExperimentSampleAssociation
description: M:N link between ExperimentRun and Sample with role metadata
from_schema: https://w3id.org/lambda-ber-schema/
attributes:
  experiment_id:
    name: experiment_id
    description: Reference to the experiment run
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: experiment_id
    owner: ExperimentSampleAssociation
    domain_of:
    - StudyExperimentAssociation
    - ExperimentSampleAssociation
    - ExperimentInstrumentAssociation
    - WorkflowExperimentAssociation
    range: ExperimentRun
    required: true
  sample_id:
    name: sample_id
    description: Reference to the sample
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: sample_id
    owner: ExperimentSampleAssociation
    domain_of:
    - SamplePreparation
    - StudySampleAssociation
    - ExperimentSampleAssociation
    range: Sample
    required: true
  role:
    name: role
    description: Role of sample in experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: role
    owner: ExperimentSampleAssociation
    domain_of:
    - StudySampleAssociation
    - ExperimentSampleAssociation
    - ExperimentInstrumentAssociation
    range: ExperimentSampleRoleEnum
  preparation_id:
    name: preparation_id
    description: Specific preparation used for this sample in this experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: preparation_id
    owner: ExperimentSampleAssociation
    domain_of:
    - ExperimentSampleAssociation
    range: SamplePreparation