Enum: DatabaseNameEnum

External database names

Permissible Values

Value	Meaning	Description
uniprot	None	UniProt
pdb	None	Protein Data Bank
pfam	None	Pfam
cath	None	CATH
scop	None	SCOP
interpro	None	InterPro
chembl	None	ChEMBL
chebi	None	ChEBI
pubchem	None	PubChem
drugbank	None	DrugBank
omim	None	OMIM
clinvar	None	ClinVar
cosmic	None	COSMIC
gnomad	None	gnomAD
intact	None	IntAct
string	None	STRING
biogrid	None	BioGRID
reactome	None	Reactome
kegg	None	KEGG
go	None	Gene Ontology
rnacentral	None	RNAcentral
rfam	None	Rfam
refseq	None	NCBI RefSeq
insdc	None	INSDC (GenBank, ENA, DDBJ)
mirbase	None	miRBase
gtrnadb	None	GtRNAdb
ndb	None	Nucleic Acid Database
modomics	None	MODOMICS, modified RNA nucleosides

Slots

Name	Description
database_name	Name of the external database

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/lambda/

LinkML Source

name: DatabaseNameEnum
description: External database names
from_schema: http://w3id.org/lambda/
rank: 1000
permissible_values:
  uniprot:
    text: uniprot
    description: UniProt
  pdb:
    text: pdb
    description: Protein Data Bank
  pfam:
    text: pfam
    description: Pfam
  cath:
    text: cath
    description: CATH
  scop:
    text: scop
    description: SCOP
  interpro:
    text: interpro
    description: InterPro
  chembl:
    text: chembl
    description: ChEMBL
  chebi:
    text: chebi
    description: ChEBI
  pubchem:
    text: pubchem
    description: PubChem
  drugbank:
    text: drugbank
    description: DrugBank
  omim:
    text: omim
    description: OMIM
  clinvar:
    text: clinvar
    description: ClinVar
  cosmic:
    text: cosmic
    description: COSMIC
  gnomad:
    text: gnomad
    description: gnomAD
  intact:
    text: intact
    description: IntAct
  string:
    text: string
    description: STRING
  biogrid:
    text: biogrid
    description: BioGRID
  reactome:
    text: reactome
    description: Reactome
  kegg:
    text: kegg
    description: KEGG
  go:
    text: go
    description: Gene Ontology
  rnacentral:
    text: rnacentral
    description: RNAcentral
  rfam:
    text: rfam
    description: Rfam
  refseq:
    text: refseq
    description: NCBI RefSeq
  insdc:
    text: insdc
    description: INSDC (GenBank, ENA, DDBJ)
  mirbase:
    text: mirbase
    description: miRBase
  gtrnadb:
    text: gtrnadb
    description: GtRNAdb
  ndb:
    text: ndb
    description: Nucleic Acid Database
  modomics:
    text: modomics
    description: MODOMICS, modified RNA nucleosides