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Class: CTFEstimationParameters

Parameters specific to CTF estimation workflows

URI: lambdaber:CTFEstimationParameters

classDiagram class CTFEstimationParameters click CTFEstimationParameters href "../CTFEstimationParameters/" AttributeGroup <|-- CTFEstimationParameters click AttributeGroup href "../AttributeGroup/" CTFEstimationParameters : amplitude_contrast CTFEstimationParameters --> "0..1" QuantityValue : amplitude_contrast click QuantityValue href "../QuantityValue/" CTFEstimationParameters : cs_used_in_estimation CTFEstimationParameters --> "0..1" QuantityValue : cs_used_in_estimation click QuantityValue href "../QuantityValue/" CTFEstimationParameters : defocus_search_max CTFEstimationParameters --> "0..1" QuantityValue : defocus_search_max click QuantityValue href "../QuantityValue/" CTFEstimationParameters : defocus_search_min CTFEstimationParameters --> "0..1" QuantityValue : defocus_search_min click QuantityValue href "../QuantityValue/" CTFEstimationParameters : defocus_step CTFEstimationParameters --> "0..1" QuantityValue : defocus_step click QuantityValue href "../QuantityValue/" CTFEstimationParameters : description CTFEstimationParameters : voltage_used_in_estimation CTFEstimationParameters --> "0..1" QuantityValue : voltage_used_in_estimation click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
defocus_search_min 0..1
QuantityValue		 Minimum defocus search range, typically specified in micrometers direct
defocus_search_max 0..1
QuantityValue		 Maximum defocus search range, typically specified in micrometers direct
defocus_step 0..1
QuantityValue		 Defocus search step, typically specified in micrometers direct
amplitude_contrast 0..1
QuantityValue		 Amplitude contrast value direct
cs_used_in_estimation 0..1
QuantityValue		 Spherical aberration (Cs) value used during CTF estimation, typically specifi... direct
voltage_used_in_estimation 0..1
QuantityValue		 Accelerating voltage value used during CTF estimation, typically specified in... direct
description 0..1
String		 AttributeGroup

Usages

used by used in type used
WorkflowRun ctf_estimation_params range CTFEstimationParameters

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:CTFEstimationParameters
native lambdaber:CTFEstimationParameters

LinkML Source

Direct

name: CTFEstimationParameters
description: Parameters specific to CTF estimation workflows
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  defocus_search_min:
    name: defocus_search_min
    description: Minimum defocus search range, typically specified in micrometers.
      Data providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  defocus_search_max:
    name: defocus_search_max
    description: Maximum defocus search range, typically specified in micrometers.
      Data providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  defocus_step:
    name: defocus_step
    description: Defocus search step, typically specified in micrometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  amplitude_contrast:
    name: amplitude_contrast
    description: Amplitude contrast value
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  cs_used_in_estimation:
    name: cs_used_in_estimation
    description: Spherical aberration (Cs) value used during CTF estimation, typically
      specified in millimeters; may differ from instrument specification. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  voltage_used_in_estimation:
    name: voltage_used_in_estimation
    description: Accelerating voltage value used during CTF estimation, typically
      specified in kilovolts (kV); may differ from instrument specification. Data
      providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true

Induced

name: CTFEstimationParameters
description: Parameters specific to CTF estimation workflows
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  defocus_search_min:
    name: defocus_search_min
    description: Minimum defocus search range, typically specified in micrometers.
      Data providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus_search_min
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  defocus_search_max:
    name: defocus_search_max
    description: Maximum defocus search range, typically specified in micrometers.
      Data providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus_search_max
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  defocus_step:
    name: defocus_step
    description: Defocus search step, typically specified in micrometers. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus_step
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  amplitude_contrast:
    name: amplitude_contrast
    description: Amplitude contrast value
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: amplitude_contrast
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  cs_used_in_estimation:
    name: cs_used_in_estimation
    description: Spherical aberration (Cs) value used during CTF estimation, typically
      specified in millimeters; may differ from instrument specification. Data providers
      may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: cs_used_in_estimation
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  voltage_used_in_estimation:
    name: voltage_used_in_estimation
    description: Accelerating voltage value used during CTF estimation, typically
      specified in kilovolts (kV); may differ from instrument specification. Data
      providers may specify alternative units by including the unit in the QuantityValue.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: voltage_used_in_estimation
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: QuantityValue
    inlined: true
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: description
    owner: CTFEstimationParameters
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string