Class: CTFEstimationParameters

Parameters specific to CTF estimation workflows

classDiagram class CTFEstimationParameters click CTFEstimationParameters href "../CTFEstimationParameters/" AttributeGroup <|-- CTFEstimationParameters click AttributeGroup href "../AttributeGroup/" CTFEstimationParameters : amplitude_contrast CTFEstimationParameters : cs_used_in_estimation CTFEstimationParameters : defocus_search_max CTFEstimationParameters : defocus_search_min CTFEstimationParameters : defocus_step CTFEstimationParameters : description CTFEstimationParameters : voltage_used_in_estimation

Inheritance

AttributeGroup
- CTFEstimationParameters

Slots

Name	Cardinality and Range	Description	Inheritance
defocus_search_min	0..1 Float	Minimum defocus search range in micrometers	direct
defocus_search_max	0..1 Float	Maximum defocus search range in micrometers	direct
defocus_step	0..1 Float	Defocus search step in micrometers	direct
amplitude_contrast	0..1 Float	Amplitude contrast value	direct
cs_used_in_estimation	0..1 Float	Spherical aberration (Cs) value used during CTF estimation (in millimeters); ...	direct
voltage_used_in_estimation	0..1 Float	Accelerating voltage value used during CTF estimation (in kV); may differ fro...	direct
description	0..1 String		AttributeGroup

Usages

used by	used in	type	used
WorkflowRun	ctf_estimation_params	range	CTFEstimationParameters

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type	Mapped Value
self	lambdaber:CTFEstimationParameters
native	lambdaber:CTFEstimationParameters

LinkML Source

Direct

name: CTFEstimationParameters
description: Parameters specific to CTF estimation workflows
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  defocus_search_min:
    name: defocus_search_min
    description: Minimum defocus search range in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: float
  defocus_search_max:
    name: defocus_search_max
    description: Maximum defocus search range in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: float
  defocus_step:
    name: defocus_step
    description: Defocus search step in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: float
  amplitude_contrast:
    name: amplitude_contrast
    description: Amplitude contrast value
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: float
  cs_used_in_estimation:
    name: cs_used_in_estimation
    description: Spherical aberration (Cs) value used during CTF estimation (in millimeters);
      may differ from instrument specification
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: float
  voltage_used_in_estimation:
    name: voltage_used_in_estimation
    description: Accelerating voltage value used during CTF estimation (in kV); may
      differ from instrument specification
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - CTFEstimationParameters
    range: float

Induced

name: CTFEstimationParameters
description: Parameters specific to CTF estimation workflows
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  defocus_search_min:
    name: defocus_search_min
    description: Minimum defocus search range in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus_search_min
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: float
  defocus_search_max:
    name: defocus_search_max
    description: Maximum defocus search range in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus_search_max
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: float
  defocus_step:
    name: defocus_step
    description: Defocus search step in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus_step
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: float
  amplitude_contrast:
    name: amplitude_contrast
    description: Amplitude contrast value
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: amplitude_contrast
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: float
  cs_used_in_estimation:
    name: cs_used_in_estimation
    description: Spherical aberration (Cs) value used during CTF estimation (in millimeters);
      may differ from instrument specification
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: cs_used_in_estimation
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: float
  voltage_used_in_estimation:
    name: voltage_used_in_estimation
    description: Accelerating voltage value used during CTF estimation (in kV); may
      differ from instrument specification
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: voltage_used_in_estimation
    owner: CTFEstimationParameters
    domain_of:
    - CTFEstimationParameters
    range: float
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: description
    owner: CTFEstimationParameters
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string