Class: BiophysicalProperty

Measured or calculated biophysical properties

classDiagram class BiophysicalProperty click BiophysicalProperty href "../BiophysicalProperty/" AttributeGroup <|-- BiophysicalProperty click AttributeGroup href "../AttributeGroup/" BiophysicalProperty : description BiophysicalProperty : error BiophysicalProperty : experimental_method BiophysicalProperty --> "0..1" BiophysicalMethodEnum : experimental_method click BiophysicalMethodEnum href "../BiophysicalMethodEnum/" BiophysicalProperty : measurement_conditions BiophysicalProperty --> "*" MeasurementConditions : measurement_conditions click MeasurementConditions href "../MeasurementConditions/" BiophysicalProperty : property_type BiophysicalProperty --> "1" BiophysicalPropertyEnum : property_type click BiophysicalPropertyEnum href "../BiophysicalPropertyEnum/" BiophysicalProperty : unit BiophysicalProperty : value

Inheritance

AttributeGroup
- BiophysicalProperty

Slots

Name	Cardinality and Range	Description	Inheritance
property_type	1 BiophysicalPropertyEnum	Type of biophysical property	direct
value	1 Float	Numerical value of the property	direct
unit	1 String	Unit of measurement	direct
error	0..1 Float	Experimental error or uncertainty	direct
measurement_conditions	* MeasurementConditions	Conditions under which measurement was made	direct
experimental_method	0..1 BiophysicalMethodEnum	Method used for measurement	direct
description	0..1 String		AttributeGroup

Usages

used by	used in	type	used
Sample	biophysical_properties	range	BiophysicalProperty
AggregatedProteinView	biophysical_properties	range	BiophysicalProperty

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type	Mapped Value
self	lambdaber:BiophysicalProperty
native	lambdaber:BiophysicalProperty

LinkML Source

Direct

name: BiophysicalProperty
description: Measured or calculated biophysical properties
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  property_type:
    name: property_type
    description: Type of biophysical property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: BiophysicalPropertyEnum
    required: true
  value:
    name: value
    description: Numerical value of the property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: float
    required: true
  unit:
    name: unit
    description: Unit of measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    required: true
  error:
    name: error
    description: Experimental error or uncertainty
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: float
  measurement_conditions:
    name: measurement_conditions
    description: Conditions under which measurement was made. If multiple sets of
      conditions were used, this will represent that the same values were obtained
      under different conditions. If values differ under different conditions, separate
      BiophysicalProperty instances should be created.
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: MeasurementConditions
    multivalued: true
    inlined: true
    inlined_as_list: true
  experimental_method:
    name: experimental_method
    description: Method used for measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    domain_of:
    - ExperimentRun
    - BiophysicalProperty
    range: BiophysicalMethodEnum

Induced

name: BiophysicalProperty
description: Measured or calculated biophysical properties
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  property_type:
    name: property_type
    description: Type of biophysical property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: property_type
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: BiophysicalPropertyEnum
    required: true
  value:
    name: value
    description: Numerical value of the property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: value
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: float
    required: true
  unit:
    name: unit
    description: Unit of measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: unit
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: string
    required: true
  error:
    name: error
    description: Experimental error or uncertainty
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: error
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: float
  measurement_conditions:
    name: measurement_conditions
    description: Conditions under which measurement was made. If multiple sets of
      conditions were used, this will represent that the same values were obtained
      under different conditions. If values differ under different conditions, separate
      BiophysicalProperty instances should be created.
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: measurement_conditions
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: MeasurementConditions
    multivalued: true
    inlined: true
    inlined_as_list: true
  experimental_method:
    name: experimental_method
    description: Method used for measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    alias: experimental_method
    owner: BiophysicalProperty
    domain_of:
    - ExperimentRun
    - BiophysicalProperty
    range: BiophysicalMethodEnum
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: description
    owner: BiophysicalProperty
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string