# YAML serialization of public JSON metadata; not a LAMBDA example. # Source: https://files.cryoetdataportal.cziscience.com/10000/TS_026/Alignments/100/alignment_metadata.json format: IMOD method_type: patch_tracking per_section_alignment_parameters: - z_index: 0 tilt_angle: -44.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0897489 - -0.9959645 - - 0.9959645 - 0.0897489 x_offset: 7.8234459018999996 y_offset: 107.28682649129999 - z_index: 1 tilt_angle: -42.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0898088 - -0.9961826 - - 0.9961826 - 0.0898088 x_offset: 11.8599087162 y_offset: 81.76976241640001 - z_index: 2 tilt_angle: -40.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0897746 - -0.9960137 - - 0.9960136 - 0.0897746 x_offset: 4.8658678995 y_offset: 73.0679554914 - z_index: 3 tilt_angle: -38.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.089766 - -0.9959441 - - 0.9959441 - 0.089766 x_offset: 8.6095887637 y_offset: 49.214899477 - z_index: 4 tilt_angle: -36.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0897497 - -0.995966 - - 0.995966 - 0.0897498 x_offset: 4.145540090000001 y_offset: 39.8086584312 - z_index: 5 tilt_angle: -34.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0897701 - -0.9960427 - - 0.9960427 - 0.0897701 x_offset: 5.0034060335 y_offset: 20.4199717045 - z_index: 6 tilt_angle: -32.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0897048 - -0.9961302 - - 0.9961302 - 0.0897048 x_offset: 0.031022848199999984 y_offset: 12.3098056326 - z_index: 7 tilt_angle: -30.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0897089 - -0.9962234 - - 0.9962234 - 0.0897089 x_offset: 1.8362409677 y_offset: -7.3009144557 - z_index: 8 tilt_angle: -28.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0895613 - -0.9964029 - - 0.9964029 - 0.0895613 x_offset: -2.5921818201 y_offset: -14.5686233543 - z_index: 9 tilt_angle: -26.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0895049 - -0.9963004 - - 0.9963004 - 0.0895049 x_offset: 0.07034891379999957 y_offset: -32.7779757618 - z_index: 10 tilt_angle: -24.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0893665 - -0.9962675 - - 0.9962675 - 0.0893665 x_offset: -3.7262276475 y_offset: -37.532272880499995 - z_index: 11 tilt_angle: -22.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0894052 - -0.9963671 - - 0.9963671 - 0.0894052 x_offset: -2.1944844829000005 y_offset: -53.883436403199994 - z_index: 12 tilt_angle: -20.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0892882 - -0.996295 - - 0.996295 - 0.0892882 x_offset: -7.1010145894 y_offset: -57.830765553000006 - z_index: 13 tilt_angle: -18.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0892788 - -0.9961902 - - 0.9961902 - 0.0892788 x_offset: 0.11724459599999972 y_offset: -74.63899879979999 - z_index: 14 tilt_angle: -16.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0891841 - -0.9963337 - - 0.9963337 - 0.0891841 x_offset: -6.0965710174000005 y_offset: -78.4759342918 - z_index: 15 tilt_angle: -14.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0889708 - -0.9962734 - - 0.9962735 - 0.0889708 x_offset: -3.0984169870000007 y_offset: -92.34843583760001 - z_index: 16 tilt_angle: -12.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0888157 - -0.9961855 - - 0.9961855 - 0.0888157 x_offset: -8.284836716700001 y_offset: -98.4326879703 - z_index: 17 tilt_angle: -10.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0886868 - -0.9961028 - - 0.9961028 - 0.0886868 x_offset: -4.42103902 y_offset: -110.49303903199998 - z_index: 18 tilt_angle: -8.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0885765 - -0.9958754 - - 0.9958754 - 0.0885765 x_offset: -10.0399262185 y_offset: -115.3627715334 - z_index: 19 tilt_angle: -6.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0883143 - -0.995781 - - 0.995781 - 0.0883143 x_offset: -8.128638397799998 y_offset: -128.42004911669997 - z_index: 20 tilt_angle: -4.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0882093 - -0.995382 - - 0.995382 - 0.0882093 x_offset: -12.079859897099999 y_offset: -133.9470414903 - z_index: 21 tilt_angle: -2.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0882145 - -0.9952919 - - 0.9952919 - 0.0882145 x_offset: -9.669283941599998 y_offset: -145.49280487439998 - z_index: 22 tilt_angle: 0.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0881409 - -0.9949507 - - 0.9949506 - 0.0881409 x_offset: -12.414348599199998 y_offset: -147.7307055465 - z_index: 23 tilt_angle: 2.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0880789 - -0.9949487 - - 0.9949487 - 0.0880789 x_offset: -10.3834324302 y_offset: -139.5614961926 - z_index: 24 tilt_angle: 4.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0881234 - -0.9951661 - - 0.9951661 - 0.0881234 x_offset: -10.755277446900001 y_offset: -124.9804618934 - z_index: 25 tilt_angle: 6.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0881516 - -0.9951689 - - 0.9951689 - 0.0881516 x_offset: -8.5432390791 y_offset: -119.919469977 - z_index: 26 tilt_angle: 8.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0881745 - -0.9953379 - - 0.9953379 - 0.0881745 x_offset: -11.5781247057 y_offset: -104.4484243287 - z_index: 27 tilt_angle: 10.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0882055 - -0.9952431 - - 0.9952431 - 0.0882055 x_offset: -9.398938047600002 y_offset: -96.2492127136 - z_index: 28 tilt_angle: 12.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0881569 - -0.995521 - - 0.9955211 - 0.0881569 x_offset: -9.0162146237 y_offset: -84.09614944270001 - z_index: 29 tilt_angle: 14.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0882411 - -0.9956999 - - 0.9956999 - 0.0882411 x_offset: -7.7338776642 y_offset: -73.27202523059998 - z_index: 30 tilt_angle: 16.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0882048 - -0.9959446 - - 0.9959447 - 0.0882048 x_offset: -9.5467511536 y_offset: -57.2920764352 - z_index: 31 tilt_angle: 18.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0880816 - -0.995859 - - 0.995859 - 0.0880816 x_offset: -8.5079305138 y_offset: -49.724042535 - z_index: 32 tilt_angle: 20.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0881853 - -0.9958534 - - 0.9958535 - 0.0881853 x_offset: -7.626221027 y_offset: -36.6589178438 - z_index: 33 tilt_angle: 22.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0879569 - -0.9959997 - - 0.9959997 - 0.0879569 x_offset: -4.4062834711 y_offset: -22.6162205643 - z_index: 34 tilt_angle: 24.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0877953 - -0.9958901 - - 0.9958901 - 0.0877953 x_offset: -3.6038409688999997 y_offset: -7.9441755003 - z_index: 35 tilt_angle: 26.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0879112 - -0.9959028 - - 0.9959027 - 0.0879112 x_offset: -0.6372259907999999 y_offset: 4.912974415700001 - z_index: 36 tilt_angle: 28.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0877637 - -0.9960704 - - 0.9960704 - 0.0877637 x_offset: -2.9867538833 y_offset: 20.342239186900002 - z_index: 37 tilt_angle: 30.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0876014 - -0.9962313 - - 0.9962313 - 0.0876014 x_offset: 0.021395559700000056 y_offset: 34.825604668900006 - z_index: 38 tilt_angle: 32.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0876174 - -0.9963054 - - 0.9963054 - 0.0876174 x_offset: -0.8915549196000007 y_offset: 49.594203954 - z_index: 39 tilt_angle: 34.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0875057 - -0.9964777 - - 0.9964777 - 0.0875057 x_offset: 5.4802388763000005 y_offset: 64.81940853370001 - z_index: 40 tilt_angle: 36.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0873485 - -0.9967687 - - 0.9967687 - 0.0873485 x_offset: 1.9023400062999996 y_offset: 81.8946697635 - z_index: 41 tilt_angle: 38.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0871715 - -0.996857 - - 0.996857 - 0.0871715 x_offset: 8.730949822000001 y_offset: 101.681399156 - z_index: 42 tilt_angle: 40.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0872618 - -0.9971403 - - 0.9971403 - 0.0872618 x_offset: 4.972330752200001 y_offset: 118.5897112817 - z_index: 43 tilt_angle: 42.0 volume_x_rotation: 0.0 in_plane_rotation: - - 0.0871868 - -0.9971998 - - 0.9971998 - 0.0871868 x_offset: 12.655676616 y_offset: 139.2099476338 alignment_path: 10000/TS_026/Alignments/100/TS_026.xf tilt_path: 10000/TS_026/Alignments/100/TS_026.tlt tiltx_path: null tiltseries_path: 10000/TS_026/TiltSeries/100/tiltseries_metadata.json files: - 10000/TS_026/Alignments/100/TS_026.xf - 10000/TS_026/Alignments/100/TS_026.tlt volume_dimension: x: 12940.800000000001 y: 12509.44 z: 13480.0 affine_transformation_matrix: - - 1 - 0 - 0 - 0 - - 0 - 1 - 0 - 0 - - 0 - 0 - 1 - 0 - - 0 - 0 - 0 - 1 alignment_type: GLOBAL is_portal_standard: false volume_offset: x: 0 y: 0 z: 0 tilt_offset: 0 x_rotation_offset: 0 deposition_id: 10000 last_updated_at: 1743041465