Class: XRFImage

X-ray fluorescence (XRF) image showing elemental distribution

classDiagram class XRFImage click XRFImage href "../XRFImage/" Image2D <|-- XRFImage click Image2D href "../Image2D/" XRFImage : acquisition_date XRFImage : astigmatism XRFImage : beam_energy XRFImage : beam_size XRFImage : calibration_standard XRFImage : defocus XRFImage : description XRFImage : detector_type XRFImage : dimensions_x XRFImage : dimensions_y XRFImage : dose XRFImage : dwell_time XRFImage : elements_measured XRFImage : exposure_time XRFImage : file_name XRFImage : flux XRFImage : id XRFImage : pixel_size XRFImage : source_type XRFImage --> "0..1" XRaySourceTypeEnum : source_type click XRaySourceTypeEnum href "../XRaySourceTypeEnum/" XRFImage : title

Inheritance

NamedThing
- Image
  - Image2D
    - XRFImage

Slots

Name	Cardinality and Range	Description	Inheritance
beam_energy	0..1 Float	X-ray beam energy in keV	direct
beam_size	0..1 Float	X-ray beam size in micrometers	direct
dwell_time	0..1 Float	Dwell time per pixel in milliseconds	direct
elements_measured	* String	Elements detected and measured	direct
source_type	0..1 XRaySourceTypeEnum	X-ray source type (synchrotron or lab-source)	direct
detector_type	0..1 String	Type of X-ray detector used	direct
flux	0..1 Float	Photon flux in photons/second	direct
calibration_standard	0..1 String	Reference standard used for calibration	direct
defocus	0..1 Float	Defocus value in micrometers	Image2D
astigmatism	0..1 Float	Astigmatism value	Image2D
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie	Globally unique identifier as an IRI or CURIE for machine processing and exte...	NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type	Mapped Value
self	lambdaber:XRFImage
native	lambdaber:XRFImage

LinkML Source

Direct

name: XRFImage
description: X-ray fluorescence (XRF) image showing elemental distribution
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image2D
attributes:
  beam_energy:
    name: beam_energy
    description: X-ray beam energy in keV
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRFImage
    - ExperimentalConditions
    range: float
  beam_size:
    name: beam_size
    description: X-ray beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRFImage
    range: float
  dwell_time:
    name: dwell_time
    description: Dwell time per pixel in milliseconds
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRFImage
    range: float
  elements_measured:
    name: elements_measured
    description: Elements detected and measured
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRFImage
    range: string
    multivalued: true
  source_type:
    name: source_type
    description: X-ray source type (synchrotron or lab-source)
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - XRayInstrument
    - XRFImage
    range: XRaySourceTypeEnum
  detector_type:
    name: detector_type
    description: Type of X-ray detector used
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - CryoEMInstrument
    - XRFImage
    range: string
  flux:
    name: flux
    description: Photon flux in photons/second
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRFImage
    range: float
  calibration_standard:
    name: calibration_standard
    description: Reference standard used for calibration
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - XRFImage
    range: string

Induced

name: XRFImage
description: X-ray fluorescence (XRF) image showing elemental distribution
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image2D
attributes:
  beam_energy:
    name: beam_energy
    description: X-ray beam energy in keV
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_energy
    owner: XRFImage
    domain_of:
    - XRFImage
    - ExperimentalConditions
    range: float
  beam_size:
    name: beam_size
    description: X-ray beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_size
    owner: XRFImage
    domain_of:
    - XRFImage
    range: float
  dwell_time:
    name: dwell_time
    description: Dwell time per pixel in milliseconds
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dwell_time
    owner: XRFImage
    domain_of:
    - XRFImage
    range: float
  elements_measured:
    name: elements_measured
    description: Elements detected and measured
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: elements_measured
    owner: XRFImage
    domain_of:
    - XRFImage
    range: string
    multivalued: true
  source_type:
    name: source_type
    description: X-ray source type (synchrotron or lab-source)
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: source_type
    owner: XRFImage
    domain_of:
    - XRayInstrument
    - XRFImage
    range: XRaySourceTypeEnum
  detector_type:
    name: detector_type
    description: Type of X-ray detector used
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: detector_type
    owner: XRFImage
    domain_of:
    - CryoEMInstrument
    - XRFImage
    range: string
  flux:
    name: flux
    description: Photon flux in photons/second
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: flux
    owner: XRFImage
    domain_of:
    - XRFImage
    range: float
  calibration_standard:
    name: calibration_standard
    description: Reference standard used for calibration
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: calibration_standard
    owner: XRFImage
    domain_of:
    - XRFImage
    range: string
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus
    owner: XRFImage
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: astigmatism
    owner: XRFImage
    domain_of:
    - Image2D
    range: float
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: file_name
    owner: XRFImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: acquisition_date
    owner: XRFImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: pixel_size
    owner: XRFImage
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_x
    owner: XRFImage
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_y
    owner: XRFImage
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: exposure_time
    owner: XRFImage
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dose
    owner: XRFImage
    domain_of:
    - Image
    range: float
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: XRFImage
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: XRFImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: XRFImage
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string