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Class: Study

A focused research investigation that groups related samples, experiments, and data collection around a specific biological question or hypothesis

URI: lambdaber:Study

classDiagram class Study click Study href "../Study/" NamedThing <|-- Study click NamedThing href "../NamedThing/" Study : aggregated_protein_views Study --> "*" AggregatedProteinView : aggregated_protein_views click AggregatedProteinView href "../AggregatedProteinView/" Study : data_files Study --> "*" DataFile : data_files click DataFile href "../DataFile/" Study : description Study : id Study : images Study --> "*" Image : images click Image href "../Image/" Study : instrument_runs Study --> "*" ExperimentRun : instrument_runs click ExperimentRun href "../ExperimentRun/" Study : protein_constructs Study --> "*" ProteinConstruct : protein_constructs click ProteinConstruct href "../ProteinConstruct/" Study : sample_preparations Study --> "*" SamplePreparation : sample_preparations click SamplePreparation href "../SamplePreparation/" Study : samples Study --> "*" Sample : samples click Sample href "../Sample/" Study : title Study : workflow_runs Study --> "*" WorkflowRun : workflow_runs click WorkflowRun href "../WorkflowRun/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
protein_constructs *
ProteinConstruct		 Protein constructs and cloning information direct
samples *
Sample		 direct
sample_preparations *
SamplePreparation		 direct
instrument_runs *
ExperimentRun		 direct
workflow_runs *
WorkflowRun		 direct
data_files *
DataFile		 direct
images *
Image		 direct
aggregated_protein_views *
AggregatedProteinView		 Aggregated functional and structural annotations for proteins in this study direct
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Usages

used by used in type used
Dataset studies range Study

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:Study
native lambdaber:Study

LinkML Source

Direct

name: Study
description: A focused research investigation that groups related samples, experiments,
  and data collection around a specific biological question or hypothesis
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  protein_constructs:
    name: protein_constructs
    description: Protein constructs and cloning information
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: ProteinConstruct
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_preparations:
    name: sample_preparations
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: SamplePreparation
    multivalued: true
    inlined: true
    inlined_as_list: true
  instrument_runs:
    name: instrument_runs
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: ExperimentRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_runs:
    name: workflow_runs
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: WorkflowRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_files:
    name: data_files
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: DataFile
    multivalued: true
    inlined: true
    inlined_as_list: true
  images:
    name: images
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: Image
    multivalued: true
    inlined: true
    inlined_as_list: true
  aggregated_protein_views:
    name: aggregated_protein_views
    description: Aggregated functional and structural annotations for proteins in
      this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Study
    range: AggregatedProteinView
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: Study
description: A focused research investigation that groups related samples, experiments,
  and data collection around a specific biological question or hypothesis
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  protein_constructs:
    name: protein_constructs
    description: Protein constructs and cloning information
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: protein_constructs
    owner: Study
    domain_of:
    - Study
    range: ProteinConstruct
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: samples
    owner: Study
    domain_of:
    - Study
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  sample_preparations:
    name: sample_preparations
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: sample_preparations
    owner: Study
    domain_of:
    - Study
    range: SamplePreparation
    multivalued: true
    inlined: true
    inlined_as_list: true
  instrument_runs:
    name: instrument_runs
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_runs
    owner: Study
    domain_of:
    - Study
    range: ExperimentRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  workflow_runs:
    name: workflow_runs
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: workflow_runs
    owner: Study
    domain_of:
    - Study
    range: WorkflowRun
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_files:
    name: data_files
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: data_files
    owner: Study
    domain_of:
    - Study
    range: DataFile
    multivalued: true
    inlined: true
    inlined_as_list: true
  images:
    name: images
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: images
    owner: Study
    domain_of:
    - Study
    range: Image
    multivalued: true
    inlined: true
    inlined_as_list: true
  aggregated_protein_views:
    name: aggregated_protein_views
    description: Aggregated functional and structural annotations for proteins in
      this study
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: aggregated_protein_views
    owner: Study
    domain_of:
    - Study
    range: AggregatedProteinView
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: Study
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Study
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: Study
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string