Class: OpticalImage

Visible light optical microscopy or photography image

classDiagram class OpticalImage click OpticalImage href "../OpticalImage/" Image2D <|-- OpticalImage click Image2D href "../Image2D/" OpticalImage : acquisition_date OpticalImage : astigmatism OpticalImage : color_channels OpticalImage : contrast_method OpticalImage : defocus OpticalImage : description OpticalImage : dimensions_x OpticalImage : dimensions_y OpticalImage : dose OpticalImage : exposure_time OpticalImage : file_name OpticalImage : id OpticalImage : illumination_type OpticalImage --> "0..1" IlluminationTypeEnum : illumination_type click IlluminationTypeEnum href "../IlluminationTypeEnum/" OpticalImage : magnification OpticalImage : numerical_aperture OpticalImage : pixel_size OpticalImage : title OpticalImage : white_balance

Inheritance

NamedThing
- Image
  - Image2D
    - OpticalImage

Slots

Name	Cardinality and Range	Description	Inheritance
illumination_type	0..1 IlluminationTypeEnum	Type of illumination (brightfield, darkfield, phase contrast, DIC)	direct
magnification	0..1 Float	Optical magnification factor	direct
numerical_aperture	0..1 Float	Numerical aperture of the objective lens	direct
color_channels	* String	Color channels present (e	direct
white_balance	0..1 String	White balance settings	direct
contrast_method	0..1 String	Contrast enhancement method used	direct
defocus	0..1 Float	Defocus value in micrometers	Image2D
astigmatism	0..1 Float	Astigmatism value	Image2D
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie	Globally unique identifier as an IRI or CURIE for machine processing and exte...	NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type	Mapped Value
self	lambdaber:OpticalImage
native	lambdaber:OpticalImage

LinkML Source

Direct

name: OpticalImage
description: Visible light optical microscopy or photography image
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image2D
attributes:
  illumination_type:
    name: illumination_type
    description: Type of illumination (brightfield, darkfield, phase contrast, DIC)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - OpticalImage
    range: IlluminationTypeEnum
  magnification:
    name: magnification
    description: Optical magnification factor
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - OpticalImage
    range: float
  numerical_aperture:
    name: numerical_aperture
    description: Numerical aperture of the objective lens
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - OpticalImage
    range: float
  color_channels:
    name: color_channels
    description: Color channels present (e.g., RGB, grayscale)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - OpticalImage
    range: string
    multivalued: true
  white_balance:
    name: white_balance
    description: White balance settings
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - OpticalImage
    range: string
  contrast_method:
    name: contrast_method
    description: Contrast enhancement method used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - OpticalImage
    range: string

Induced

name: OpticalImage
description: Visible light optical microscopy or photography image
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image2D
attributes:
  illumination_type:
    name: illumination_type
    description: Type of illumination (brightfield, darkfield, phase contrast, DIC)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: illumination_type
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: IlluminationTypeEnum
  magnification:
    name: magnification
    description: Optical magnification factor
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: magnification
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: float
  numerical_aperture:
    name: numerical_aperture
    description: Numerical aperture of the objective lens
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: numerical_aperture
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: float
  color_channels:
    name: color_channels
    description: Color channels present (e.g., RGB, grayscale)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: color_channels
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: string
    multivalued: true
  white_balance:
    name: white_balance
    description: White balance settings
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: white_balance
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: string
  contrast_method:
    name: contrast_method
    description: Contrast enhancement method used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: contrast_method
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: string
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: defocus
    owner: OpticalImage
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: astigmatism
    owner: OpticalImage
    domain_of:
    - Image2D
    range: float
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: file_name
    owner: OpticalImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: acquisition_date
    owner: OpticalImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: pixel_size
    owner: OpticalImage
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_x
    owner: OpticalImage
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_y
    owner: OpticalImage
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: exposure_time
    owner: OpticalImage
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dose
    owner: OpticalImage
    domain_of:
    - Image
    range: float
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: OpticalImage
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: OpticalImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: OpticalImage
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string