Class: Image3D

A 3D volume or tomogram

classDiagram class Image3D click Image3D href "../Image3D/" Image <|-- Image3D click Image href "../Image/" Image3D : acquisition_date Image3D : description Image3D : dimensions_x Image3D : dimensions_y Image3D : dimensions_z Image3D : dose Image3D : exposure_time Image3D : file_name Image3D : id Image3D : pixel_size Image3D : reconstruction_method Image3D : title Image3D : voxel_size

Inheritance

NamedThing
- Image
  - Image3D

Slots

Name	Cardinality and Range	Description	Inheritance
dimensions_z	0..1 Integer	Image depth in pixels/slices	direct
voxel_size	0..1 Float	Voxel size in Angstroms	direct
reconstruction_method	0..1 String	Method used for 3D reconstruction	direct
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie	Globally unique identifier as an IRI or CURIE for machine processing and exte...	NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type	Mapped Value
self	lambdaber:Image3D
native	lambdaber:Image3D

LinkML Source

Direct

name: Image3D
description: A 3D volume or tomogram
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image
attributes:
  dimensions_z:
    name: dimensions_z
    description: Image depth in pixels/slices
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Image3D
    range: integer
  voxel_size:
    name: voxel_size
    description: Voxel size in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Image3D
    range: float
  reconstruction_method:
    name: reconstruction_method
    description: Method used for 3D reconstruction
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - Image3D

Induced

name: Image3D
description: A 3D volume or tomogram
from_schema: https://w3id.org/lambda-ber-schema/
is_a: Image
attributes:
  dimensions_z:
    name: dimensions_z
    description: Image depth in pixels/slices
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_z
    owner: Image3D
    domain_of:
    - Image3D
    range: integer
  voxel_size:
    name: voxel_size
    description: Voxel size in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: voxel_size
    owner: Image3D
    domain_of:
    - Image3D
    range: float
  reconstruction_method:
    name: reconstruction_method
    description: Method used for 3D reconstruction
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: reconstruction_method
    owner: Image3D
    domain_of:
    - Image3D
    range: string
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: file_name
    owner: Image3D
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: acquisition_date
    owner: Image3D
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: pixel_size
    owner: Image3D
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_x
    owner: Image3D
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dimensions_y
    owner: Image3D
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: exposure_time
    owner: Image3D
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dose
    owner: Image3D
    domain_of:
    - Image
    range: float
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: Image3D
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Image3D
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: Image3D
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string