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Class: ExperimentRun

An experimental data collection session

URI: lambdaber:ExperimentRun

classDiagram class ExperimentRun click ExperimentRun href "../ExperimentRun/" NamedThing <|-- ExperimentRun click NamedThing href "../NamedThing/" ExperimentRun : data_collection_strategy ExperimentRun --> "0..1" DataCollectionStrategy : data_collection_strategy click DataCollectionStrategy href "../DataCollectionStrategy/" ExperimentRun : description ExperimentRun : experiment_code ExperimentRun : experiment_date ExperimentRun : experimental_conditions ExperimentRun --> "0..1" ExperimentalConditions : experimental_conditions click ExperimentalConditions href "../ExperimentalConditions/" ExperimentRun : experimental_method ExperimentRun --> "0..1" ExperimentalMethodEnum : experimental_method click ExperimentalMethodEnum href "../ExperimentalMethodEnum/" ExperimentRun : id ExperimentRun : instrument_id ExperimentRun --> "1" Instrument : instrument_id click Instrument href "../Instrument/" ExperimentRun : operator_id ExperimentRun : processing_status ExperimentRun --> "0..1" ProcessingStatusEnum : processing_status click ProcessingStatusEnum href "../ProcessingStatusEnum/" ExperimentRun : quality_metrics ExperimentRun --> "0..1" QualityMetrics : quality_metrics click QualityMetrics href "../QualityMetrics/" ExperimentRun : raw_data_location ExperimentRun : sample_id ExperimentRun : technique ExperimentRun --> "1" TechniqueEnum : technique click TechniqueEnum href "../TechniqueEnum/" ExperimentRun : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
experiment_code 1
String		 Human-friendly laboratory or facility identifier for the experiment (e direct
sample_id 1
String		 Reference to the sample being analyzed direct
instrument_id 1
Instrument		 Reference to the instrument used direct
experiment_date 0..1
String		 Date of the experiment direct
operator_id 0..1
String		 Identifier or name of the person who performed the experiment data collection... direct
technique 1
TechniqueEnum		 Technique used for data collection direct
experimental_method 0..1
ExperimentalMethodEnum		 Specific experimental method for structure determination (particularly for di... direct
experimental_conditions 0..1
ExperimentalConditions		 Environmental and experimental conditions direct
data_collection_strategy 0..1
DataCollectionStrategy		 Strategy for data collection direct
quality_metrics 0..1
QualityMetrics		 Quality metrics for the experiment direct
raw_data_location 0..1
String		 Location of raw data files direct
processing_status 0..1
ProcessingStatusEnum		 Current processing status direct
id 1
Uriorcurie		 Globally unique identifier as an IRI or CURIE for machine processing and exte... NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Usages

used by used in type used
Study instrument_runs range ExperimentRun

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:ExperimentRun
native lambdaber:ExperimentRun

LinkML Source

Direct

name: ExperimentRun
description: An experimental data collection session
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  experiment_code:
    name: experiment_code
    description: Human-friendly laboratory or facility identifier for the experiment
      (e.g., 'SIBYLS-2024-02-01-hetBGL', 'CRYOEM-RUN-240815-001'). Used for local
      tracking and cross-referencing within laboratory systems.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    required: true
  sample_id:
    name: sample_id
    description: Reference to the sample being analyzed
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
    required: true
  instrument_id:
    name: instrument_id
    description: Reference to the instrument used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: Instrument
    required: true
  experiment_date:
    name: experiment_date
    description: Date of the experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: string
  operator_id:
    name: operator_id
    description: Identifier or name of the person who performed the experiment data
      collection (e.g., 'jsmith', 'John Smith', or personnel ID)
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
  technique:
    name: technique
    description: Technique used for data collection
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: TechniqueEnum
    required: true
  experimental_method:
    name: experimental_method
    description: Specific experimental method for structure determination (particularly
      for diffraction techniques)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    - BiophysicalProperty
    range: ExperimentalMethodEnum
  experimental_conditions:
    name: experimental_conditions
    description: Environmental and experimental conditions
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: ExperimentalConditions
  data_collection_strategy:
    name: data_collection_strategy
    description: Strategy for data collection
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: DataCollectionStrategy
  quality_metrics:
    name: quality_metrics
    description: Quality metrics for the experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    domain_of:
    - Sample
    - ExperimentRun
    range: QualityMetrics
  raw_data_location:
    name: raw_data_location
    description: Location of raw data files
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
  processing_status:
    name: processing_status
    description: Current processing status
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: ProcessingStatusEnum

Induced

name: ExperimentRun
description: An experimental data collection session
from_schema: https://w3id.org/lambda-ber-schema/
is_a: NamedThing
attributes:
  experiment_code:
    name: experiment_code
    description: Human-friendly laboratory or facility identifier for the experiment
      (e.g., 'SIBYLS-2024-02-01-hetBGL', 'CRYOEM-RUN-240815-001'). Used for local
      tracking and cross-referencing within laboratory systems.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: experiment_code
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
    required: true
  sample_id:
    name: sample_id
    description: Reference to the sample being analyzed
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: sample_id
    owner: ExperimentRun
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
    required: true
  instrument_id:
    name: instrument_id
    description: Reference to the instrument used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: instrument_id
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: Instrument
    required: true
  experiment_date:
    name: experiment_date
    description: Date of the experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: experiment_date
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
  operator_id:
    name: operator_id
    description: Identifier or name of the person who performed the experiment data
      collection (e.g., 'jsmith', 'John Smith', or personnel ID)
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: operator_id
    owner: ExperimentRun
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
  technique:
    name: technique
    description: Technique used for data collection
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: technique
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: TechniqueEnum
    required: true
  experimental_method:
    name: experimental_method
    description: Specific experimental method for structure determination (particularly
      for diffraction techniques)
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: experimental_method
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    - BiophysicalProperty
    range: ExperimentalMethodEnum
  experimental_conditions:
    name: experimental_conditions
    description: Environmental and experimental conditions
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: experimental_conditions
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: ExperimentalConditions
  data_collection_strategy:
    name: data_collection_strategy
    description: Strategy for data collection
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: data_collection_strategy
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: DataCollectionStrategy
  quality_metrics:
    name: quality_metrics
    description: Quality metrics for the experiment
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: quality_metrics
    owner: ExperimentRun
    domain_of:
    - Sample
    - ExperimentRun
    range: QualityMetrics
  raw_data_location:
    name: raw_data_location
    description: Location of raw data files
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: raw_data_location
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
  processing_status:
    name: processing_status
    description: Current processing status
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: processing_status
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: ProcessingStatusEnum
  id:
    name: id
    description: Globally unique identifier as an IRI or CURIE for machine processing
      and external references. Used for linking data across systems and semantic web
      integration.
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    identifier: true
    alias: id
    owner: ExperimentRun
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: ExperimentRun
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: description
    owner: ExperimentRun
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string