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Class: DataCollectionStrategy

Strategy for data collection

URI: lambdaber:DataCollectionStrategy

classDiagram class DataCollectionStrategy click DataCollectionStrategy href "../DataCollectionStrategy/" AttributeGroup <|-- DataCollectionStrategy click AttributeGroup href "../AttributeGroup/" DataCollectionStrategy : attenuator DataCollectionStrategy : beam_center_x_px DataCollectionStrategy : beam_center_y_px DataCollectionStrategy : beam_size_um DataCollectionStrategy : collection_mode DataCollectionStrategy --> "0..1" CollectionModeEnum : collection_mode click CollectionModeEnum href "../CollectionModeEnum/" DataCollectionStrategy : description DataCollectionStrategy : detector DataCollectionStrategy : detector_distance_mm DataCollectionStrategy : dose_per_frame DataCollectionStrategy : flux_photons_per_s DataCollectionStrategy : frame_rate DataCollectionStrategy : oscillation_per_image_deg DataCollectionStrategy : strategy_notes DataCollectionStrategy : temperature_k DataCollectionStrategy : total_dose DataCollectionStrategy : total_frames DataCollectionStrategy : total_rotation_deg DataCollectionStrategy : transmission_percent DataCollectionStrategy : wavelength_a

Inheritance

Slots

Name Cardinality and Range Description Inheritance
collection_mode 0..1
CollectionModeEnum		 Mode of data collection direct
total_frames 0..1
Integer		 Total number of frames/images direct
frame_rate 0..1
Float		 Frames per second direct
total_dose 0..1
Float		 Total electron dose for cryo-EM direct
dose_per_frame 0..1
Float		 Dose per frame direct
wavelength_a 0..1
Float		 X-ray wavelength in Angstroms direct
detector 0..1
String		 Detector model/type direct
detector_distance_mm 0..1
Float		 Detector distance in millimeters direct
beam_center_x_px 0..1
Integer		 Beam center X coordinate in pixels direct
beam_center_y_px 0..1
Integer		 Beam center Y coordinate in pixels direct
beam_size_um 0..1
Float		 Beam size in micrometers direct
flux_photons_per_s 0..1
Float		 Photon flux in photons per second direct
transmission_percent 0..1
Float		 Beam transmission percentage direct
attenuator 0..1
String		 Attenuator setting used direct
temperature_k 0..1
Float		 Data collection temperature in Kelvin direct
oscillation_per_image_deg 0..1
Float		 Oscillation angle per image in degrees direct
total_rotation_deg 0..1
Float		 Total rotation range in degrees direct
strategy_notes 0..1
String		 Notes about data collection strategy direct
description 0..1
String		 AttributeGroup

Usages

used by used in type used
ExperimentRun data_collection_strategy range DataCollectionStrategy

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:DataCollectionStrategy
native lambdaber:DataCollectionStrategy

LinkML Source

Direct

name: DataCollectionStrategy
description: Strategy for data collection
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  collection_mode:
    name: collection_mode
    description: Mode of data collection
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: CollectionModeEnum
  total_frames:
    name: total_frames
    description: Total number of frames/images
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: integer
  frame_rate:
    name: frame_rate
    description: Frames per second
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  total_dose:
    name: total_dose
    description: Total electron dose for cryo-EM
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  dose_per_frame:
    name: dose_per_frame
    description: Dose per frame
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  wavelength_a:
    name: wavelength_a
    description: X-ray wavelength in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  detector:
    name: detector
    description: Detector model/type
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
  detector_distance_mm:
    name: detector_distance_mm
    description: Detector distance in millimeters
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  beam_center_x_px:
    name: beam_center_x_px
    description: Beam center X coordinate in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: integer
  beam_center_y_px:
    name: beam_center_y_px
    description: Beam center Y coordinate in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: integer
  beam_size_um:
    name: beam_size_um
    description: Beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  flux_photons_per_s:
    name: flux_photons_per_s
    description: Photon flux in photons per second
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  transmission_percent:
    name: transmission_percent
    description: Beam transmission percentage
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  attenuator:
    name: attenuator
    description: Attenuator setting used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
  temperature_k:
    name: temperature_k
    description: Data collection temperature in Kelvin
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  oscillation_per_image_deg:
    name: oscillation_per_image_deg
    description: Oscillation angle per image in degrees
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  total_rotation_deg:
    name: total_rotation_deg
    description: Total rotation range in degrees
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy
    range: float
  strategy_notes:
    name: strategy_notes
    description: Notes about data collection strategy
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    domain_of:
    - DataCollectionStrategy

Induced

name: DataCollectionStrategy
description: Strategy for data collection
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  collection_mode:
    name: collection_mode
    description: Mode of data collection
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: collection_mode
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: CollectionModeEnum
  total_frames:
    name: total_frames
    description: Total number of frames/images
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: total_frames
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: integer
  frame_rate:
    name: frame_rate
    description: Frames per second
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: frame_rate
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  total_dose:
    name: total_dose
    description: Total electron dose for cryo-EM
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: total_dose
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  dose_per_frame:
    name: dose_per_frame
    description: Dose per frame
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: dose_per_frame
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  wavelength_a:
    name: wavelength_a
    description: X-ray wavelength in Angstroms
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: wavelength_a
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  detector:
    name: detector
    description: Detector model/type
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: detector
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: string
  detector_distance_mm:
    name: detector_distance_mm
    description: Detector distance in millimeters
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: detector_distance_mm
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  beam_center_x_px:
    name: beam_center_x_px
    description: Beam center X coordinate in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_center_x_px
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: integer
  beam_center_y_px:
    name: beam_center_y_px
    description: Beam center Y coordinate in pixels
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_center_y_px
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: integer
  beam_size_um:
    name: beam_size_um
    description: Beam size in micrometers
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: beam_size_um
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  flux_photons_per_s:
    name: flux_photons_per_s
    description: Photon flux in photons per second
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: flux_photons_per_s
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  transmission_percent:
    name: transmission_percent
    description: Beam transmission percentage
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: transmission_percent
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  attenuator:
    name: attenuator
    description: Attenuator setting used
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: attenuator
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: string
  temperature_k:
    name: temperature_k
    description: Data collection temperature in Kelvin
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: temperature_k
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  oscillation_per_image_deg:
    name: oscillation_per_image_deg
    description: Oscillation angle per image in degrees
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: oscillation_per_image_deg
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  total_rotation_deg:
    name: total_rotation_deg
    description: Total rotation range in degrees
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: total_rotation_deg
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: float
  strategy_notes:
    name: strategy_notes
    description: Notes about data collection strategy
    from_schema: https://w3id.org/lambda-ber-schema/
    rank: 1000
    alias: strategy_notes
    owner: DataCollectionStrategy
    domain_of:
    - DataCollectionStrategy
    range: string
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: description
    owner: DataCollectionStrategy
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string