Skip to content

Class: ConformationalState

Individual conformational state

URI: lambdaber:ConformationalState

classDiagram class ConformationalState click ConformationalState href "../ConformationalState/" AttributeGroup <|-- ConformationalState click AttributeGroup href "../AttributeGroup/" ConformationalState : characteristic_features ConformationalState : description ConformationalState : free_energy ConformationalState : pdb_entries ConformationalState : population ConformationalState : rmsd_from_reference ConformationalState : state_id ConformationalState : state_name

Inheritance

Slots

Name Cardinality and Range Description Inheritance
state_id 1
String		 Identifier for this state direct
state_name 0..1
String		 Descriptive name (e direct
pdb_entries *
String		 PDB entries representing this state direct
population 0..1
Float		 Relative population of this state direct
free_energy 0..1
Float		 Relative free energy (kcal/mol) direct
rmsd_from_reference 0..1
Float		 RMSD from reference structure direct
characteristic_features *
String		 Key features of this conformation direct
description 0..1
String		 AttributeGroup

Usages

used by used in type used
ConformationalEnsemble conformational_states range ConformationalState

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:ConformationalState
native lambdaber:ConformationalState

LinkML Source

Direct

name: ConformationalState
description: Individual conformational state
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  state_id:
    name: state_id
    description: Identifier for this state
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
    required: true
  state_name:
    name: state_name
    description: Descriptive name (e.g., 'open', 'closed')
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
  pdb_entries:
    name: pdb_entries
    description: PDB entries representing this state
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
    - AggregatedProteinView
    multivalued: true
  population:
    name: population
    description: Relative population of this state
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
    range: float
    minimum_value: 0
    maximum_value: 1
  free_energy:
    name: free_energy
    description: Relative free energy (kcal/mol)
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
    range: float
    unit:
      ucum_code: kcal/mol
  rmsd_from_reference:
    name: rmsd_from_reference
    description: RMSD from reference structure
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
    range: float
    unit:
      ucum_code: Angstrom
  characteristic_features:
    name: characteristic_features
    description: Key features of this conformation
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - ConformationalState
    multivalued: true

Induced

name: ConformationalState
description: Individual conformational state
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  state_id:
    name: state_id
    description: Identifier for this state
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: state_id
    owner: ConformationalState
    domain_of:
    - ConformationalState
    range: string
    required: true
  state_name:
    name: state_name
    description: Descriptive name (e.g., 'open', 'closed')
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: state_name
    owner: ConformationalState
    domain_of:
    - ConformationalState
    range: string
  pdb_entries:
    name: pdb_entries
    description: PDB entries representing this state
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: pdb_entries
    owner: ConformationalState
    domain_of:
    - ConformationalState
    - AggregatedProteinView
    range: string
    multivalued: true
  population:
    name: population
    description: Relative population of this state
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: population
    owner: ConformationalState
    domain_of:
    - ConformationalState
    range: float
    minimum_value: 0
    maximum_value: 1
  free_energy:
    name: free_energy
    description: Relative free energy (kcal/mol)
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: free_energy
    owner: ConformationalState
    domain_of:
    - ConformationalState
    range: float
    unit:
      ucum_code: kcal/mol
  rmsd_from_reference:
    name: rmsd_from_reference
    description: RMSD from reference structure
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: rmsd_from_reference
    owner: ConformationalState
    domain_of:
    - ConformationalState
    range: float
    unit:
      ucum_code: Angstrom
  characteristic_features:
    name: characteristic_features
    description: Key features of this conformation
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: characteristic_features
    owner: ConformationalState
    domain_of:
    - ConformationalState
    range: string
    multivalued: true
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: description
    owner: ConformationalState
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string