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Class: BiophysicalProperty

Measured or calculated biophysical properties

URI: lambdaber:BiophysicalProperty

classDiagram class BiophysicalProperty click BiophysicalProperty href "../BiophysicalProperty/" AttributeGroup <|-- BiophysicalProperty click AttributeGroup href "../AttributeGroup/" BiophysicalProperty : description BiophysicalProperty : error BiophysicalProperty : experimental_method BiophysicalProperty --> "0..1" BiophysicalMethodEnum : experimental_method click BiophysicalMethodEnum href "../BiophysicalMethodEnum/" BiophysicalProperty : ionic_strength BiophysicalProperty : measurement_conditions BiophysicalProperty : ph BiophysicalProperty : property_type BiophysicalProperty --> "1" BiophysicalPropertyEnum : property_type click BiophysicalPropertyEnum href "../BiophysicalPropertyEnum/" BiophysicalProperty : temperature BiophysicalProperty : unit BiophysicalProperty : value

Inheritance

Slots

Name Cardinality and Range Description Inheritance
property_type 1
BiophysicalPropertyEnum		 Type of biophysical property direct
value 1
Float		 Numerical value of the property direct
unit 1
String		 Unit of measurement direct
error 0..1
Float		 Experimental error or uncertainty direct
measurement_conditions 0..1
String		 Conditions under which measurement was made direct
temperature 0..1
Float		 Temperature in Kelvin direct
ph 0..1
Float		 pH value direct
ionic_strength 0..1
Float		 Ionic strength in molar direct
experimental_method 0..1
BiophysicalMethodEnum		 Method used for measurement direct
description 0..1
String		 AttributeGroup

Usages

used by used in type used
Sample biophysical_properties range BiophysicalProperty
AggregatedProteinView biophysical_properties range BiophysicalProperty

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lambda-ber-schema/

Mappings

Mapping Type Mapped Value
self lambdaber:BiophysicalProperty
native lambdaber:BiophysicalProperty

LinkML Source

Direct

name: BiophysicalProperty
description: Measured or calculated biophysical properties
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  property_type:
    name: property_type
    description: Type of biophysical property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: BiophysicalPropertyEnum
    required: true
  value:
    name: value
    description: Numerical value of the property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: float
    required: true
  unit:
    name: unit
    description: Unit of measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    required: true
  error:
    name: error
    description: Experimental error or uncertainty
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: float
  measurement_conditions:
    name: measurement_conditions
    description: Conditions under which measurement was made
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
  temperature:
    name: temperature
    description: Temperature in Kelvin
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    domain_of:
    - StorageConditions
    - ExperimentalConditions
    - BiophysicalProperty
    range: float
    unit:
      ucum_code: K
  ph:
    name: ph
    description: pH value
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    domain_of:
    - BufferComposition
    - BiophysicalProperty
    range: float
    minimum_value: 0
    maximum_value: 14
  ionic_strength:
    name: ionic_strength
    description: Ionic strength in molar
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    domain_of:
    - BiophysicalProperty
    range: float
    unit:
      ucum_code: mol/L
  experimental_method:
    name: experimental_method
    description: Method used for measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    domain_of:
    - ExperimentRun
    - BiophysicalProperty
    range: BiophysicalMethodEnum

Induced

name: BiophysicalProperty
description: Measured or calculated biophysical properties
from_schema: https://w3id.org/lambda-ber-schema/
is_a: AttributeGroup
attributes:
  property_type:
    name: property_type
    description: Type of biophysical property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: property_type
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: BiophysicalPropertyEnum
    required: true
  value:
    name: value
    description: Numerical value of the property
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: value
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: float
    required: true
  unit:
    name: unit
    description: Unit of measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: unit
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: string
    required: true
  error:
    name: error
    description: Experimental error or uncertainty
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: error
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: float
  measurement_conditions:
    name: measurement_conditions
    description: Conditions under which measurement was made
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: measurement_conditions
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: string
  temperature:
    name: temperature
    description: Temperature in Kelvin
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    alias: temperature
    owner: BiophysicalProperty
    domain_of:
    - StorageConditions
    - ExperimentalConditions
    - BiophysicalProperty
    range: float
    unit:
      ucum_code: K
  ph:
    name: ph
    description: pH value
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    alias: ph
    owner: BiophysicalProperty
    domain_of:
    - BufferComposition
    - BiophysicalProperty
    range: float
    minimum_value: 0
    maximum_value: 14
  ionic_strength:
    name: ionic_strength
    description: Ionic strength in molar
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    rank: 1000
    alias: ionic_strength
    owner: BiophysicalProperty
    domain_of:
    - BiophysicalProperty
    range: float
    unit:
      ucum_code: mol/L
  experimental_method:
    name: experimental_method
    description: Method used for measurement
    from_schema: https://w3id.org/lambda-ber-schema/functional_annotation
    alias: experimental_method
    owner: BiophysicalProperty
    domain_of:
    - ExperimentRun
    - BiophysicalProperty
    range: BiophysicalMethodEnum
  description:
    name: description
    from_schema: https://w3id.org/lambda-ber-schema/
    alias: description
    owner: BiophysicalProperty
    domain_of:
    - NamedThing
    - AttributeGroup
    range: string